Miyakogusa Predicted Gene

Lj0g3v0171359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0171359.1 Non Characterized Hit- tr|D8RQG8|D8RQG8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,45.05,3e-16,PAXNEB,Elongator complex protein 4; SUBFAMILY NOT
NAMED,NULL; PAX6 NEIGHBOR PROTEIN (PAXNEB),NULL,CUFF.10755.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g007340.1 | elongator complex protein | HC | chr8:1470311-...   325   2e-89
Medtr8g007340.2 | elongator complex protein | HC | chr8:1470311-...   232   2e-61

>Medtr8g007340.1 | elongator complex protein | HC |
           chr8:1470311-1464807 | 20130731
          Length = 360

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/195 (80%), Positives = 170/195 (87%), Gaps = 5/195 (2%)

Query: 1   MAATRPRASSFSRNVSTVTSQNPGLKHGPNGTMFISSGILDLDKILGGDFSLGSLVMIME 60
           MAATR R SSFSRNVSTVTSQN GLKHGPNGT F+SSGI DLDKILGG FSLGSLVMIME
Sbjct: 1   MAATRTRVSSFSRNVSTVTSQNSGLKHGPNGTTFLSSGIPDLDKILGGGFSLGSLVMIME 60

Query: 61  DAEAPHHMLLLRNFMSQGLVHRQPLLYASASYNPKGFLGTLPCPGTSK-----DLGHEKD 115
           DAEAPHHMLLLRN MSQGLVH+QPLLYASAS +PKGFLGTLP P  +K     DL +EKD
Sbjct: 61  DAEAPHHMLLLRNLMSQGLVHKQPLLYASASRDPKGFLGTLPAPAPAKEDKSQDLTNEKD 120

Query: 116 LRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNVYCLSFQDSPNRA 175
           LRIAWQYKKYFG+PQ N++SNNG QHDYCN+FDLRKPLDRHF+ GMNV C+S QDSPN A
Sbjct: 121 LRIAWQYKKYFGDPQSNISSNNGAQHDYCNEFDLRKPLDRHFYSGMNVDCVSIQDSPNLA 180

Query: 176 TLQDRCAGFLAQCSR 190
           +LQD+CA FL+Q SR
Sbjct: 181 SLQDQCAKFLSQFSR 195


>Medtr8g007340.2 | elongator complex protein | HC |
           chr8:1470311-1464807 | 20130731
          Length = 304

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 120/139 (86%), Gaps = 5/139 (3%)

Query: 57  MIMEDAEAPHHMLLLRNFMSQGLVHRQPLLYASASYNPKGFLGTLPCPGTSK-----DLG 111
           MIMEDAEAPHHMLLLRN MSQGLVH+QPLLYASAS +PKGFLGTLP P  +K     DL 
Sbjct: 1   MIMEDAEAPHHMLLLRNLMSQGLVHKQPLLYASASRDPKGFLGTLPAPAPAKEDKSQDLT 60

Query: 112 HEKDLRIAWQYKKYFGEPQLNVNSNNGGQHDYCNDFDLRKPLDRHFFGGMNVYCLSFQDS 171
           +EKDLRIAWQYKKYFG+PQ N++SNNG QHDYCN+FDLRKPLDRHF+ GMNV C+S QDS
Sbjct: 61  NEKDLRIAWQYKKYFGDPQSNISSNNGAQHDYCNEFDLRKPLDRHFYSGMNVDCVSIQDS 120

Query: 172 PNRATLQDRCAGFLAQCSR 190
           PN A+LQD+CA FL+Q SR
Sbjct: 121 PNLASLQDQCAKFLSQFSR 139