Miyakogusa Predicted Gene

Lj0g3v0170919.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170919.2 Non Characterized Hit- tr|B9SEY2|B9SEY2_RICCO
Polyglutamine binding protein, putative (Fragment)
OS=,68.18,2e-17,WW_DOMAIN_2,WW/Rsp5/WWP; no description,WW/Rsp5/WWP;
Domain with 2 conserved Trp (W) residues,WW/Rsp,CUFF.10721.2
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g051155.1 | polyglutamine-binding protein | HC | chr1:1996...   103   3e-23

>Medtr1g051155.1 | polyglutamine-binding protein | HC |
           chr1:19968651-19975737 | 20130731
          Length = 467

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 57/67 (85%)

Query: 5   VEAKDPGSCACYYYNESTGKSQWEKPHEASSIEQSPSPLHLSENWVEALDETTGHKYYYN 64
           V+AKDPGS A YYYNESTG+SQWEKP EAS  +QS + L L ++WVEALDETTGHKYYYN
Sbjct: 202 VKAKDPGSGAFYYYNESTGRSQWEKPGEASLTQQSTTVLCLPDSWVEALDETTGHKYYYN 261

Query: 65  TKTHVSQ 71
           TKT VSQ
Sbjct: 262 TKTKVSQ 268