Miyakogusa Predicted Gene

Lj0g3v0170789.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170789.2 Non Characterized Hit- tr|K4DH16|K4DH16_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58,2e-18,seg,NULL,CUFF.10708.2
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g114920.1 | high mobility group B-like protein | HC | chr3...   144   3e-35
Medtr1g116180.1 | transcription factor | HC | chr1:52519486-5251...    72   2e-13
Medtr1g116180.2 | transcription factor | HC | chr1:52519467-5251...    72   2e-13
Medtr7g005970.1 | high mobility group B-like protein | LC | chr7...    69   1e-12
Medtr2g084410.1 | hypothetical protein | HC | chr2:35562786-3555...    46   9e-06
Medtr2g084410.5 | hypothetical protein | HC | chr2:35562905-3555...    46   9e-06
Medtr2g084410.7 | hypothetical protein | HC | chr2:35562905-3555...    46   9e-06
Medtr2g084410.4 | hypothetical protein | HC | chr2:35562905-3555...    46   9e-06
Medtr2g084410.3 | hypothetical protein | HC | chr2:35562943-3555...    46   9e-06
Medtr2g084410.6 | hypothetical protein | HC | chr2:35562943-3555...    46   9e-06
Medtr2g084410.2 | hypothetical protein | HC | chr2:35562943-3555...    46   9e-06
Medtr2g084375.1 | hypothetical protein | HC | chr2:35543387-3554...    46   1e-05

>Medtr3g114920.1 | high mobility group B-like protein | HC |
           chr3:53678262-53676021 | 20130731
          Length = 327

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 82/126 (65%)

Query: 17  KPDFNLVEYSPKPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHX 76
           KP+  +V+YSPK  N S ES  E    L G+GTIEGKFDCGYLVSV+LGSEVL+GVL+H 
Sbjct: 145 KPELAIVQYSPKMVNYSAESHDEDNSLLLGKGTIEGKFDCGYLVSVELGSEVLKGVLYHQ 204

Query: 77  XXXXXXXXXXXQDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKL 136
                      Q  GAI PFN +             WDPNYPKPNRSGYNFFFA KH KL
Sbjct: 205 EKVVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKL 264

Query: 137 KELYPN 142
           KELYPN
Sbjct: 265 KELYPN 270


>Medtr1g116180.1 | transcription factor | HC |
           chr1:52519486-52514092 | 20130731
          Length = 415

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 34  PESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXXX------XXXXXXXXX 87
           PE++  +  G    G I+GKFD GYLV+V +GSE L+GVL+                   
Sbjct: 177 PEAMGSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSVPANN 236

Query: 88  QDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKLKELY 140
            +V A V  + +              DP +PKPNRSGYNFFFA +H +LK L+
Sbjct: 237 NNVTASVGVHRRRRRKKSEMKKR---DPAHPKPNRSGYNFFFAEQHPRLKPLH 286


>Medtr1g116180.2 | transcription factor | HC |
           chr1:52519467-52514170 | 20130731
          Length = 333

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 34  PESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXXX------XXXXXXXXX 87
           PE++  +  G    G I+GKFD GYLV+V +GSE L+GVL+                   
Sbjct: 177 PEAMGSSSAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSVPANN 236

Query: 88  QDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKLKELY 140
            +V A V  + +              DP +PKPNRSGYNFFFA +H +LK L+
Sbjct: 237 NNVTASVGVHRRRRRKKSEMKKR---DPAHPKPNRSGYNFFFAEQHPRLKPLH 286


>Medtr7g005970.1 | high mobility group B-like protein | LC |
           chr7:435478-439265 | 20130731
          Length = 437

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 18  PDFNLVEYSPKPANNSPESIVEAKGGLYGEGTIEGKFDCGYLVSVKLGSEVLRGVLFHXX 77
           P  + V++     N S    V + G     G I+GKF+ GYLVSV +GSE L+GVL+   
Sbjct: 161 PGTHPVDFQKSGVNASELPQVSSSGSSLA-GVIDGKFESGYLVSVSVGSETLKGVLYESP 219

Query: 78  XXXXXXXXXXQDVGAIVPFNPKAXXXXXXXXXXXXWDPNYPKPNRSGYNFFFAAKHTKLK 137
                         A      +              DP +PKPNRSGYNFFFA +H +LK
Sbjct: 220 QSIKINNNNI----ASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLK 275

Query: 138 EL 139
            L
Sbjct: 276 LL 277


>Medtr2g084410.1 | hypothetical protein | HC |
           chr2:35562786-35558318 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.5 | hypothetical protein | HC |
           chr2:35562905-35558205 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.7 | hypothetical protein | HC |
           chr2:35562905-35558205 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.4 | hypothetical protein | HC |
           chr2:35562905-35558258 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.3 | hypothetical protein | HC |
           chr2:35562943-35558205 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.6 | hypothetical protein | HC |
           chr2:35562943-35558258 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084410.2 | hypothetical protein | HC |
           chr2:35562943-35558205 | 20130731
          Length = 278

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 230 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 257


>Medtr2g084375.1 | hypothetical protein | HC |
           chr2:35543387-35541196 | 20130731
          Length = 264

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 48  GTIEGKFDCGYLVSVKLGSEVLRGVLFH 75
           GTI+GKFD GY+V+V LGSE L+GVL+H
Sbjct: 216 GTIDGKFDDGYIVTVDLGSEQLKGVLYH 243