Miyakogusa Predicted Gene

Lj0g3v0169939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0169939.1 tr|B9H7E5|B9H7E5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_209887
PE=4,39.38,7e-17, ,CUFF.10655.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g030300.1 | small glutamine-rich TPR containing protein, p...   170   5e-43

>Medtr1g030300.1 | small glutamine-rich TPR containing protein,
           putative | HC | chr1:10531288-10522947 | 20130731
          Length = 481

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 7/152 (4%)

Query: 2   YSAALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARGPRSHGVPPP 61
           +  ALQLDPNN  VKEN++ A  KL++E+   D NQ  RS +EFQN  ARG RSH  P  
Sbjct: 273 FKKALQLDPNNESVKENIRVAEHKLMEERHRADHNQNSRS-QEFQNHYARGSRSHAAPAS 331

Query: 62  FTSMPFNPNNLASMFMNMAPNATNAHQGPHPQE-REDANTSGADEPEIRAGSSNFSMNFE 120
           F SMPFNP+NLASMFM     A N  QG H QE +EDAN+SGA+EPEIR G  N ++N +
Sbjct: 332 FGSMPFNPSNLASMFMA----AANGGQGSHSQEGQEDANSSGANEPEIRFGG-NVNVNQD 386

Query: 121 QIPQDLSGAFQSMMEMFSGSVPPGQPHDQTNG 152
           QIPQ+L GAFQS+M MFSG+ PPGQPHDQ NG
Sbjct: 387 QIPQELRGAFQSVMHMFSGNAPPGQPHDQMNG 418