Miyakogusa Predicted Gene

Lj0g3v0168529.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0168529.1 Non Characterized Hit- tr|K4DCD0|K4DCD0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.84,0.000000005,seg,NULL,CUFF.10567.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116500.1 | hypothetical protein | HC | chr4:48260415-4826...    92   1e-19

>Medtr4g116500.1 | hypothetical protein | HC |
           chr4:48260415-48261004 | 20130731
          Length = 138

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 71/121 (58%), Gaps = 5/121 (4%)

Query: 3   EEDSTLESPXXXXXXXXXXXXXXXXXGFPNHRVRPRIARSTSL-XXXXXXXKPSRSTDFT 61
           EEDSTLESP                  F +HRV+PRI RS+SL          SRS D  
Sbjct: 4   EEDSTLESPHSLKYKLKSSLCFSC--CFSHHRVKPRIVRSSSLRTHNRNHNNNSRSIDLP 61

Query: 62  HLKEKRCNFIARIGXXXXXXXSADFHYDALSYALNFDDVTSDNNRPADDIRSFSPRLPAS 121
           HLKEK  NFI+RI        SADFHYDALSYALNF+D  +D  +  DD+RSFS RLPAS
Sbjct: 62  HLKEKCTNFISRI-VHHRRRHSADFHYDALSYALNFEDDAND-EKSVDDLRSFSARLPAS 119

Query: 122 P 122
           P
Sbjct: 120 P 120