Miyakogusa Predicted Gene

Lj0g3v0168359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0168359.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,63.24,3e-18,dsRNA-binding domain-like,NULL;
DS_RBD,Double-stranded RNA-binding; Double-stranded RNA binding
moti,CUFF.10551.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g028020.1 | double-stranded RNA-binding motif protein | LC...   112   2e-25
Medtr6g028020.3 | double-stranded RNA-binding motif protein | LC...   112   2e-25
Medtr6g092600.1 | double-stranded RNA-binding motif protein | LC...    87   9e-18
Medtr6g092580.1 | double-stranded RNA-binding motif protein | LC...    84   7e-17
Medtr3g079650.1 | double-stranded RNA-binding motif protein | LC...    79   1e-15
Medtr3g079720.1 | double-stranded RNA-binding motif protein | LC...    70   1e-12
Medtr3g079670.1 | double-stranded RNA-binding motif protein | HC...    69   3e-12
Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC...    60   1e-09
Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC...    60   1e-09
Medtr7g114310.1 | double-stranded RNA-binding motif protein | HC...    60   1e-09
Medtr3g079700.1 | double-stranded RNA-binding motif protein | LC...    56   1e-08
Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC...    55   4e-08
Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC...    55   4e-08
Medtr6g028020.2 | double-stranded RNA-binding motif protein | LC...    49   2e-06

>Medtr6g028020.1 | double-stranded RNA-binding motif protein | LC |
           chr6:9910998-9922435 | 20130731
          Length = 529

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 88/169 (52%), Gaps = 14/169 (8%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           MYKTKLQ LCQKNS+ LP+Y+T+REGP HN RFS+TVTVN + FSS  P+ + KL+Q+ A
Sbjct: 1   MYKTKLQELCQKNSYPLPEYQTTREGPPHNSRFSTTVTVNSISFSSPEPARTIKLSQDSA 60

Query: 61  AMLAFIHFSQXXXXXXXXXXXXXXXXXXXXXXXXHSFPQPX----XXXXXXXXXXXXXXX 116
           AM+AF H                            SFPQP                    
Sbjct: 61  AMVAFHHLE----------LMKNPTPGSPFLQDFGSFPQPEPCLSAVSVSSLSQGSPVLS 110

Query: 117 XDVVNMLPTDRRLQLKLEEACQTSQTSGPVTAVKDVMITQDQKTRIGSY 165
            +V + LPT++  Q   E  CQT Q S PV AV DV+  Q+ K+ +  Y
Sbjct: 111 PEVGSTLPTNQVFQPNSEPVCQTIQISSPVAAVTDVVKEQELKSMMHLY 159



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           +YK++LQ   QK +  LP+Y    EGP HN RF   VT++G  F S     + + A+  A
Sbjct: 158 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 217

Query: 61  AMLAF 65
           A +AF
Sbjct: 218 AEVAF 222


>Medtr6g028020.3 | double-stranded RNA-binding motif protein | LC |
           chr6:9910995-9922435 | 20130731
          Length = 528

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 88/169 (52%), Gaps = 14/169 (8%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           MYKTKLQ LCQKNS+ LP+Y+T+REGP HN RFS+TVTVN + FSS  P+ + KL+Q+ A
Sbjct: 1   MYKTKLQELCQKNSYPLPEYQTTREGPPHNSRFSTTVTVNSISFSSPEPARTIKLSQDSA 60

Query: 61  AMLAFIHFSQXXXXXXXXXXXXXXXXXXXXXXXXHSFPQPX----XXXXXXXXXXXXXXX 116
           AM+AF H                            SFPQP                    
Sbjct: 61  AMVAFHHLE----------LMKNPTPGSPFLQDFGSFPQPEPCLSAVSVSSLSQGSPVLS 110

Query: 117 XDVVNMLPTDRRLQLKLEEACQTSQTSGPVTAVKDVMITQDQKTRIGSY 165
            +V + LPT++  Q   E  CQT Q S PV AV DV+  Q+ K+ +  Y
Sbjct: 111 PEVGSTLPTNQVFQPNSEPVCQTIQISSPVAAVTDVVKEQELKSMMHLY 159



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           +YK++LQ   QK +  LP+Y    EGP HN RF   VT++G  F S     + + A+  A
Sbjct: 158 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 217

Query: 61  AMLAF 65
           A +AF
Sbjct: 218 AEVAF 222


>Medtr6g092600.1 | double-stranded RNA-binding motif protein | LC
          | chr6:34873895-34873668 | 20130731
          Length = 75

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MY  KLQ LCQKNS+ LP+Y+T+ EGP HNP FSSTVTV  + F+S  P+ + K +Q   
Sbjct: 1  MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60

Query: 61 AMLAFIHFSQ 70
          AM+AF HF Q
Sbjct: 61 AMVAFHHFLQ 70


>Medtr6g092580.1 | double-stranded RNA-binding motif protein | LC |
           chr6:34868989-34871956 | 20130731
          Length = 105

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%)

Query: 3   KTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAAM 62
           K KLQ LCQKNS+ LP Y+T+ EGP HNP FSSTVTV  + F+S  P+ + K +Q  AAM
Sbjct: 33  KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92

Query: 63  LAFIHFSQ 70
           +AF HF Q
Sbjct: 93  VAFHHFLQ 100


>Medtr3g079650.1 | double-stranded RNA-binding motif protein | LC
          | chr3:35950333-35953425 | 20130731
          Length = 414

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          M+KTKLQ LC +  WSLP Y  + +GP H P F+++V VNGV F+S+    SAK AQN A
Sbjct: 1  MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60

Query: 61 AMLAFIHFS 69
          AM AF +F+
Sbjct: 61 AMKAFRNFT 69


>Medtr3g079720.1 | double-stranded RNA-binding motif protein | LC
          | chr3:35977761-35980465 | 20130731
          Length = 390

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSR-EGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQND 59
          MYK++LQ  C +  WSLP+Y +   +GP HNP F  +V VNG+ F+S+    S+K A N 
Sbjct: 1  MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 60

Query: 60 AAMLAFIHFS 69
          AAM A ++FS
Sbjct: 61 AAMKALLNFS 70



 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 3   KTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAAM 62
           K+ LQ L Q+   S+P Y+++R GP H P F STV V GV F   + S S K A+ DAA 
Sbjct: 192 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKA-SSSKKEAEYDAAK 250

Query: 63  LAF 65
           +A+
Sbjct: 251 IAY 253


>Medtr3g079670.1 | double-stranded RNA-binding motif protein | HC
          | chr3:35955140-35957326 | 20130731
          Length = 372

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSR-EGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQND 59
          M+K+KLQ LC +  WSLP Y     +GP HNP F  +V VNG+ F+S+    S+  AQN 
Sbjct: 1  MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60

Query: 60 AAMLAFIHFS 69
          AAM AF +F+
Sbjct: 61 AAMKAFRNFT 70



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 3   KTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAAM 62
           K+ LQ L ++  +S P Y+T++ GP H P F STV V G+ F   + S S   A+ DAA 
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKA-SKSKNKAEEDAAK 240

Query: 63  LAFI 66
           +A+I
Sbjct: 241 IAYI 244


>Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC
          | chr2:40288473-40292848 | 20130731
          Length = 408

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60

Query: 61 AMLAFIHFS 69
          A +A    S
Sbjct: 61 AEVALNSLS 69


>Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC
          | chr4:21760281-21755984 | 20130731
          Length = 473

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF +TV  NG  F S     + + A++ A
Sbjct: 1  MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCTTLRQAEHSA 60

Query: 61 AMLAFIHFSQ 70
          A +A    S 
Sbjct: 61 AEVALSSLSH 70


>Medtr7g114310.1 | double-stranded RNA-binding motif protein | HC
          | chr7:47187253-47183014 | 20130731
          Length = 505

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          MYK +LQ L Q++ ++LP Y   REGPDH PRF  TV  NG  F S +   + + A++ A
Sbjct: 1  MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60

Query: 61 AMLAF 65
          A +A 
Sbjct: 61 AEVAL 65


>Medtr3g079700.1 | double-stranded RNA-binding motif protein | LC
          | chr3:35967574-35973361 | 20130731
          Length = 714

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 1  MYKTKLQVLCQKNSWSLPDYET-SREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQND 59
          M K +LQ LC +  WSLP Y   + +GP H P F  +V VNG+ F+S +   S+K A N 
Sbjct: 1  MNKMRLQELCHQRKWSLPKYSALNVDGPPHKPSFKGSVFVNGLTFTSDAFH-SSKEAHNQ 59

Query: 60 AAMLAFIHF 68
          AA+ A ++F
Sbjct: 60 AALKALLNF 68



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 2   YKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDAA 61
           YK+ LQ L QK  +S P Y+T++ G  H P F S V V GV F   + S S K A+ DAA
Sbjct: 175 YKSLLQELTQKKGFSKPTYKTTQTGSLHMPTFFSAVEVEGVEF-HGNASRSKKEAERDAA 233

Query: 62  MLAF 65
            +A+
Sbjct: 234 KIAY 237


>Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC
          | chr3:46001282-45997216 | 20130731
          Length = 660

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          ++K++LQ   QK     P YET++EGP H P F STV +N V + S +   + K A+  A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75

Query: 61 AMLAFIHFSQ 70
          A +A +  ++
Sbjct: 76 AEVALMELAK 85


>Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC
          | chr3:46001282-45997216 | 20130731
          Length = 662

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 1  MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
          ++K++LQ   QK     P YET++EGP H P F STV +N V + S +   + K A+  A
Sbjct: 18 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 77

Query: 61 AMLAFIHFSQ 70
          A +A +  ++
Sbjct: 78 AEVALMELAK 87


>Medtr6g028020.2 | double-stranded RNA-binding motif protein | LC |
           chr6:9916610-9922373 | 20130731
          Length = 503

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 1   MYKTKLQVLCQKNSWSLPDYETSREGPDHNPRFSSTVTVNGVPFSSASPSCSAKLAQNDA 60
           +YK++LQ   QK +  LP+Y    EGP HN RF   VT++G  F S     + + A+  A
Sbjct: 132 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 191

Query: 61  AMLAF 65
           A +AF
Sbjct: 192 AEVAF 196