Miyakogusa Predicted Gene

Lj0g3v0166159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0166159.1 tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit
processome component OS=Glycine max PE=3 SV=1,87.13,0,HIV-1 REV
BINDING PROTEIN 2, 3,Ribosomal RNA assembly KRR1; no description,NULL;
Eukaryotic type KH-,NODE_55418_length_1398_cov_52.560085.path2.1
         (280 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g087520.2 | KRR1 small subunit processome component | HC |...   421   e-118
Medtr5g087520.1 | KRR1 small subunit processome component | HC |...   421   e-118
Medtr6g040240.1 | KRR1 small subunit processome component, putat...    91   1e-18

>Medtr5g087520.2 | KRR1 small subunit processome component | HC |
           chr5:37928131-37933383 | 20130731
          Length = 425

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/242 (83%), Positives = 213/242 (88%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NID WKVEKFDPSWNE GM+EVSSFSTLFPQYREKYLQEAWPLVKSSLKEFG+S ELNLV
Sbjct: 75  NIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLV 134

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKT+DPYIIVKARDLI+LLSRSVPAPQAIK+LDDE+QCDIIKISG+VRNKE
Sbjct: 135 EGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKE 194

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVS MGS+KGLKQVRRIVEECMLNK+H
Sbjct: 195 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMH 254

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXPYTALISPLKLE 275
           PVYNIKILMMKKELEKDPALAQENWDRFLP                  PYT    P +  
Sbjct: 255 PVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPS 314

Query: 276 KM 277
           K+
Sbjct: 315 KV 316


>Medtr5g087520.1 | KRR1 small subunit processome component | HC |
           chr5:37928131-37933383 | 20130731
          Length = 424

 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/242 (83%), Positives = 213/242 (88%)

Query: 36  NIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGVSCELNLV 95
           NID WKVEKFDPSWNE GM+EVSSFSTLFPQYREKYLQEAWPLVKSSLKEFG+S ELNLV
Sbjct: 74  NIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISAELNLV 133

Query: 96  EGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKE 155
           EGSMTVSTTRKT+DPYIIVKARDLI+LLSRSVPAPQAIK+LDDE+QCDIIKISG+VRNKE
Sbjct: 134 EGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGLVRNKE 193

Query: 156 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLH 215
           RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVS MGS+KGLKQVRRIVEECMLNK+H
Sbjct: 194 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECMLNKMH 253

Query: 216 PVYNIKILMMKKELEKDPALAQENWDRFLPXXXXXXXXXXXXXXXXXXPYTALISPLKLE 275
           PVYNIKILMMKKELEKDPALAQENWDRFLP                  PYT    P +  
Sbjct: 254 PVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPPPQQPS 313

Query: 276 KM 277
           K+
Sbjct: 314 KV 315


>Medtr6g040240.1 | KRR1 small subunit processome component, putative
           | HC | chr6:14432186-14431083 | 20130731
          Length = 90

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/46 (91%), Positives = 44/46 (95%)

Query: 63  LFPQYREKYLQEAWPLVKSSLKEFGVSCELNLVEGSMTVSTTRKTR 108
            FPQYREKYLQEAWPLVKSSLKEFG+S ELNLVEGSMTVSTTRKT+
Sbjct: 32  FFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTK 77