Miyakogusa Predicted Gene

Lj0g3v0166089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0166089.1 Non Characterized Hit- tr|C4R705|C4R705_PICPG
Putative uncharacterized protein OS=Pichia pastoris
(s,37.31,8e-19,seg,NULL; OPA3,Optic atrophy 3-like; SUBFAMILY NOT
NAMED,NULL; OPTIC ATROPHY 3 PROTEIN (OPA3),Optic ,CUFF.10411.1
         (170 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g079210.1 | optic atrophy 3 protein | HC | chr4:30585212-3...   217   3e-57
Medtr4g079210.2 | optic atrophy 3 protein | HC | chr4:30585212-3...   178   2e-45
Medtr2g014860.1 | optic atrophy 3 protein | HC | chr2:4320028-43...   174   4e-44

>Medtr4g079210.1 | optic atrophy 3 protein | HC |
           chr4:30585212-30587507 | 20130731
          Length = 170

 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 124/170 (72%)

Query: 1   MVVLPLVKLGTLALKTACKPIANRLKKEAGYHPKFRTFIISIAQANHRFSTRMQRRIYGN 60
           M VLPLVKLGTL L+T CKPIANRLKKEAGYHPKFR FIISIAQANHRF+TR+QRRIYG 
Sbjct: 1   MAVLPLVKLGTLVLRTVCKPIANRLKKEAGYHPKFRNFIISIAQANHRFTTRIQRRIYGK 60

Query: 61  TTDAAIRPLNEEKAVQAAADMLGELFVFTVAGAAVIFEVXXXXXXXXXXXXXXXXXXXXM 120
            TD  IRPL+++KAVQAAAD+LGELFVF+VAGAAVI+EV                    +
Sbjct: 61  ATDVLIRPLDQDKAVQAAADLLGELFVFSVAGAAVIYEVQRNARSEARKEELRRQEIQAI 120

Query: 121 KTRNEEMARKIXXXXXXXXXXDQLARARGLAGVLNFRHTHTSEDKKSKSN 170
           KTR+EE++R+I          ++LAR RGL G  NFR ++  ED KSKSN
Sbjct: 121 KTRSEELSREIELLEQKLHEMEKLARGRGLIGFFNFRLSNAGEDLKSKSN 170


>Medtr4g079210.2 | optic atrophy 3 protein | HC |
          chr4:30585212-30587173 | 20130731
          Length = 121

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 91/99 (91%)

Query: 1  MVVLPLVKLGTLALKTACKPIANRLKKEAGYHPKFRTFIISIAQANHRFSTRMQRRIYGN 60
          M VLPLVKLGTL L+T CKPIANRLKKEAGYHPKFR FIISIAQANHRF+TR+QRRIYG 
Sbjct: 1  MAVLPLVKLGTLVLRTVCKPIANRLKKEAGYHPKFRNFIISIAQANHRFTTRIQRRIYGK 60

Query: 61 TTDAAIRPLNEEKAVQAAADMLGELFVFTVAGAAVIFEV 99
           TD  IRPL+++KAVQAAAD+LGELFVF+VAGAAVI+EV
Sbjct: 61 ATDVLIRPLDQDKAVQAAADLLGELFVFSVAGAAVIYEV 99


>Medtr2g014860.1 | optic atrophy 3 protein | HC |
           chr2:4320028-4324848 | 20130731
          Length = 169

 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 114/166 (68%)

Query: 3   VLPLVKLGTLALKTACKPIANRLKKEAGYHPKFRTFIISIAQANHRFSTRMQRRIYGNTT 62
           +LPL+KLGTLALKT  KP+A +LK++A  HP+FR  I+++AQ+NH+ +T+MQRRIYG+ T
Sbjct: 1   MLPLLKLGTLALKTLSKPLAGKLKQQAAIHPRFRQLIVNMAQSNHQITTKMQRRIYGHAT 60

Query: 63  DAAIRPLNEEKAVQAAADMLGELFVFTVAGAAVIFEVXXXXXXXXXXXXXXXXXXXXMKT 122
           D  IRPLNEEKAVQAA D++GELFVF+VA A +IFEV                    ++ 
Sbjct: 61  DVEIRPLNEEKAVQAAVDLIGELFVFSVAVAVLIFEVQRSARSEARKEEIRKRELEAVRQ 120

Query: 123 RNEEMARKIXXXXXXXXXXDQLARARGLAGVLNFRHTHTSEDKKSK 168
           +N+ +A ++          +QLAR RGL G+LNF+H  + E++K++
Sbjct: 121 KNDGLAEEVELLKLRLQELEQLARGRGLTGILNFKHIISKENEKTE 166