Miyakogusa Predicted Gene

Lj0g3v0165929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165929.1 Non Characterized Hit- tr|J3LLB6|J3LLB6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G1,43.75,2e-18,coiled-coil,NULL; seg,NULL; Remorin_C,Remorin,
C-terminal,CUFF.10399.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g082910.1 | carboxy-terminal region remorin | HC | chr4:32...   251   7e-67
Medtr5g043690.2 | carboxy-terminal region remorin | HC | chr5:19...   157   1e-38
Medtr5g043690.1 | carboxy-terminal region remorin | HC | chr5:19...   157   1e-38
Medtr3g023650.1 | carboxy-terminal region remorin | HC | chr3:71...    84   1e-16
Medtr5g043685.1 | carboxy-terminal region remorin | LC | chr5:19...    57   2e-08

>Medtr4g082910.1 | carboxy-terminal region remorin | HC |
           chr4:32232844-32230281 | 20130731
          Length = 356

 Score =  251 bits (641), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 178/341 (52%), Positives = 201/341 (58%), Gaps = 65/341 (19%)

Query: 1   MSRDYDSIEMEHXXXXXXXXXXI------ISQEKEMIDPREISMTRTKSKVDAKKPPILS 54
           MS DYD IEMEH          I      I  E+ M +  E S+T+T+SK   KK    S
Sbjct: 57  MSHDYDFIEMEHATAVAAAAFAISSHVSEIPHEQNMWEFPESSLTKTRSKAYDKKSS-FS 115

Query: 55  HLGSVSKRFSGSFKTTDDQGSYKVPISPATEQKKPEKT--FTPAPSMKKALTFSEKFQ-S 111
            LG+ SKR SGSFK TD+QG+     S   E+KKPEKT  F PAPSMKK  TF EK + +
Sbjct: 116 QLGAASKRLSGSFKITDEQGNTVPTTSSIREEKKPEKTISFAPAPSMKKTPTFGEKSKRN 175

Query: 112 TDKKPETSVPKKTPSFSDQHLMNTDDIXXXXXXXXXXXXFSDPYLMDTDDIKPEAETPK- 170
            DKKP+   PKK                                + +TDDI+PE  TPK 
Sbjct: 176 DDKKPDILKPKK--------------------------------VTNTDDIQPE--TPKA 201

Query: 171 --------PEVPRWSMXXXXXXX------IRQTSTPARVPPTGQTLPRPGTSEAKADAWL 216
                   P    W               IRQTST AR P T     RP  +EAKADAW 
Sbjct: 202 KILPLVDDPTTSSWPQPQPPPPPPPPQPPIRQTSTAAR-PST-----RPSETEAKADAWE 255

Query: 217 REELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYID 276
           REELK IKERYEKLLETIDSWEKRK+MKARRKLNKHEQS+N RKR KA +KYQDK+KYID
Sbjct: 256 REELKKIKERYEKLLETIDSWEKRKKMKARRKLNKHEQSENTRKREKAWKKYQDKIKYID 315

Query: 277 EIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVCSCF 317
           EIA GARAQS ER +NE L+AK+KAN IRTTGKLPG CSCF
Sbjct: 316 EIAEGARAQSDERRKNETLKAKDKANIIRTTGKLPGACSCF 356


>Medtr5g043690.2 | carboxy-terminal region remorin | HC |
           chr5:19203526-19201222 | 20130731
          Length = 313

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/318 (38%), Positives = 158/318 (49%), Gaps = 64/318 (20%)

Query: 2   SRDYDSIEMEHXXXXXXXXXXIISQE--KEMIDPREISMTRTKSKVDAKKPPILSHLGSV 59
            RDYD IEM H          I  QE  ++  +  E S  + KS +D+ K        S 
Sbjct: 58  GRDYDYIEMVHAAAVAAAALSINLQETFEQKSETPEASSAKVKSNMDSTKSSKSLLS-SA 116

Query: 60  SKRFSGSFKTTDDQGSYKVPISPATEQKKPEKTFTPAPSMKKALTFSEKFQSTDKKPETS 119
           SKR SGSF++ DDQG  KV  S   E+KKPEK  TPAPSMKK  TF      T KK  ++
Sbjct: 117 SKRLSGSFRSKDDQGD-KVSTSSVIEEKKPEKAITPAPSMKKTSTF------TGKKTNST 169

Query: 120 VPKKTPSFSDQHLMNTDDIXXXXXXXXXXXXFSDPYLMDTDDIKPEAETPKPEVPRWSMX 179
           VP   P                                    I+  +E P P        
Sbjct: 170 VPNAPPPPPPPP----------------------------PPIRKTSEKPGP-------- 193

Query: 180 XXXXXXIRQTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEK 239
                 +RQT+T +    T              D W R EL+ IK+RYEKL   IDSWE 
Sbjct: 194 ------LRQTTTGSNNGETNAD-----------DEWERTELEKIKQRYEKLKVLIDSWED 236

Query: 240 RKRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKE 299
           +KRMKA+RKL K E S+ ER+R KA+ K+Q+KMKY++ +A GARA++ E  +NEEL+AK 
Sbjct: 237 KKRMKAKRKLMKQE-SEIERRRLKALEKFQNKMKYVNLVADGARAKAEESRKNEELQAKG 295

Query: 300 KANKIRTTGKLPGVCSCF 317
           K + IRTT KLP +  CF
Sbjct: 296 KGSTIRTTCKLPRMYFCF 313


>Medtr5g043690.1 | carboxy-terminal region remorin | HC |
           chr5:19203706-19201150 | 20130731
          Length = 312

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/318 (38%), Positives = 158/318 (49%), Gaps = 64/318 (20%)

Query: 2   SRDYDSIEMEHXXXXXXXXXXIISQE--KEMIDPREISMTRTKSKVDAKKPPILSHLGSV 59
            RDYD IEM H          I  QE  ++  +  E S  + KS +D+ K        S 
Sbjct: 57  GRDYDYIEMVHAAAVAAAALSINLQETFEQKSETPEASSAKVKSNMDSTKSSKSLLS-SA 115

Query: 60  SKRFSGSFKTTDDQGSYKVPISPATEQKKPEKTFTPAPSMKKALTFSEKFQSTDKKPETS 119
           SKR SGSF++ DDQG  KV  S   E+KKPEK  TPAPSMKK  TF      T KK  ++
Sbjct: 116 SKRLSGSFRSKDDQGD-KVSTSSVIEEKKPEKAITPAPSMKKTSTF------TGKKTNST 168

Query: 120 VPKKTPSFSDQHLMNTDDIXXXXXXXXXXXXFSDPYLMDTDDIKPEAETPKPEVPRWSMX 179
           VP   P                                    I+  +E P P        
Sbjct: 169 VPNAPPPPPPPP----------------------------PPIRKTSEKPGP-------- 192

Query: 180 XXXXXXIRQTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEK 239
                 +RQT+T +    T              D W R EL+ IK+RYEKL   IDSWE 
Sbjct: 193 ------LRQTTTGSNNGETNAD-----------DEWERTELEKIKQRYEKLKVLIDSWED 235

Query: 240 RKRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKE 299
           +KRMKA+RKL K E S+ ER+R KA+ K+Q+KMKY++ +A GARA++ E  +NEEL+AK 
Sbjct: 236 KKRMKAKRKLMKQE-SEIERRRLKALEKFQNKMKYVNLVADGARAKAEESRKNEELQAKG 294

Query: 300 KANKIRTTGKLPGVCSCF 317
           K + IRTT KLP +  CF
Sbjct: 295 KGSTIRTTCKLPRMYFCF 312


>Medtr3g023650.1 | carboxy-terminal region remorin | HC |
           chr3:7183246-7180922 | 20130731
          Length = 235

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 7/127 (5%)

Query: 197 PTGQTLPRPG------TSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLN 250
           PTG    + G       ++AKA+AW + +++ I++RYEK+   I SWE  KR++A++++ 
Sbjct: 107 PTGGYQNQKGIVLHNKNNKAKAEAWEKAKMERIQKRYEKMKSQILSWEGEKRVQAKQQME 166

Query: 251 KHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKL 310
           + ++++ +  RA A+  Y+ K+  ID I   A  +  +  R EEL+ KEKANKIR TGK+
Sbjct: 167 R-KKNELDYTRANAIEHYKRKIARIDMIGQRAIKELEDNRRKEELKVKEKANKIRKTGKV 225

Query: 311 PGVCSCF 317
           P  C CF
Sbjct: 226 PVTCFCF 232


>Medtr5g043685.1 | carboxy-terminal region remorin | LC |
           chr5:19199685-19197212 | 20130731
          Length = 289

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 39/150 (26%)

Query: 191 TPARVP-PTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKL 249
           TPAR P P  +T    G++  + +   R E   I +RYEK  E IDSWE +K++KA+R+L
Sbjct: 122 TPARKPDPQRETTT--GSNNGETNKQERTEPDKINQRYEKSKELIDSWEDKKKIKAKREL 179

Query: 250 NKHEQSDNERKRAKAMRKY----------------------------------QDKMKYI 275
            K  QS+ ER R K++ KY                                  Q KMKY+
Sbjct: 180 MKQ-QSELERGRKKSLEKYVNLVADGAIAKAEESRKKLQSELERGSKKSSEKFQKKMKYV 238

Query: 276 DEIAGGARAQSHE-RLRNEELRAKEKANKI 304
           + +A  ARA++ E R + E+L+ K KA+ I
Sbjct: 239 NIVADRARAKAKECRPKKEKLQVKGKASTI 268