Miyakogusa Predicted Gene

Lj0g3v0165779.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165779.2 Non Characterized Hit- tr|I1H2B1|I1H2B1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.98,8e-19,seg,NULL,CUFF.10387.2
         (242 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g067265.1 | FAD-binding protein, putative | HC | chr8:2813...   231   5e-61
Medtr8g067265.2 | FAD-binding protein, putative | HC | chr8:2813...   137   1e-32
Medtr8g067265.3 | FAD-binding protein, putative | HC | chr8:2813...   137   1e-32

>Medtr8g067265.1 | FAD-binding protein, putative | HC |
           chr8:28130890-28133538 | 20130731
          Length = 224

 Score =  231 bits (589), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 151/218 (69%), Gaps = 2/218 (0%)

Query: 27  ITKIDELVNAGSKLLSGFQQALEFMRKPPIDTKSKLVNKIIVANETKRVKSYVNSGCRNP 86
           ITKIDEL  AGSKLLSGFQQALEF+RKP ID  SKLVN II ANET+R+K+Y+N  C+N 
Sbjct: 7   ITKIDELGTAGSKLLSGFQQALEFIRKPAIDKNSKLVNSIIKANETERLKAYINFECKNR 66

Query: 87  NNDVQSVTNLHSCKNGLNDIISKAKVILGELEGLLGDVTSSIESLHGNL-ALAAPDCGVK 145
            + V++ TNL SCK GL  +I + KV+L EL+ +  +VT+  + +HG L AL+ PD  VK
Sbjct: 67  KDVVRNATNLGSCKQGLLHLIREVKVVLDELDDIKANVTNVSQRMHGKLSALSDPDIDVK 126

Query: 146 LYAQASYNDLEENAALSHSQSTDVTIT-TKKSIDVASLAALMAVIYSMVKQDYLMQERIV 204
           L      N++++NAA SHS STDV+ T +K+  D  SLA LM  IY MV++DYLMQERIV
Sbjct: 127 LNELRIDNNVDKNAACSHSGSTDVSATNSKEKTDYTSLAFLMVGIYEMVQEDYLMQERIV 186

Query: 205 XXXXXXXXXXXXXXYCQMWPLRPFINDEIMHQAWKHVH 242
                         YCQMW L PFINDEI HQAWK++ 
Sbjct: 187 FALDLNMSTEELENYCQMWSLHPFINDEITHQAWKYIR 224


>Medtr8g067265.2 | FAD-binding protein, putative | HC |
           chr8:28130452-28134161 | 20130731
          Length = 161

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 94/146 (64%), Gaps = 2/146 (1%)

Query: 98  SCKNGLNDIISKAKVILGELEGLLGDVTSSIESLHGNL-ALAAPDCGVKLYAQASYNDLE 156
           SCK GL  +I + KV+L EL+ +  +VT+  + +HG L AL+ PD  VKL      N+++
Sbjct: 15  SCKQGLLHLIREVKVVLDELDDIKANVTNVSQRMHGKLSALSDPDIDVKLNELRIDNNVD 74

Query: 157 ENAALSHSQSTDVTIT-TKKSIDVASLAALMAVIYSMVKQDYLMQERIVXXXXXXXXXXX 215
           +NAA SHS STDV+ T +K+  D  SLA LM  IY MV++DYLMQERIV           
Sbjct: 75  KNAACSHSGSTDVSATNSKEKTDYTSLAFLMVGIYEMVQEDYLMQERIVFALDLNMSTEE 134

Query: 216 XXXYCQMWPLRPFINDEIMHQAWKHV 241
              YCQMW L PFINDEI HQAWK++
Sbjct: 135 LENYCQMWSLHPFINDEITHQAWKYI 160


>Medtr8g067265.3 | FAD-binding protein, putative | HC |
           chr8:28130450-28134161 | 20130731
          Length = 161

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 94/146 (64%), Gaps = 2/146 (1%)

Query: 98  SCKNGLNDIISKAKVILGELEGLLGDVTSSIESLHGNL-ALAAPDCGVKLYAQASYNDLE 156
           SCK GL  +I + KV+L EL+ +  +VT+  + +HG L AL+ PD  VKL      N+++
Sbjct: 15  SCKQGLLHLIREVKVVLDELDDIKANVTNVSQRMHGKLSALSDPDIDVKLNELRIDNNVD 74

Query: 157 ENAALSHSQSTDVTIT-TKKSIDVASLAALMAVIYSMVKQDYLMQERIVXXXXXXXXXXX 215
           +NAA SHS STDV+ T +K+  D  SLA LM  IY MV++DYLMQERIV           
Sbjct: 75  KNAACSHSGSTDVSATNSKEKTDYTSLAFLMVGIYEMVQEDYLMQERIVFALDLNMSTEE 134

Query: 216 XXXYCQMWPLRPFINDEIMHQAWKHV 241
              YCQMW L PFINDEI HQAWK++
Sbjct: 135 LENYCQMWSLHPFINDEITHQAWKYI 160