Miyakogusa Predicted Gene

Lj0g3v0165759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165759.1 tr|I1J6W0|I1J6W0_SOYBN tRNA-dihydrouridine
synthase OS=Glycine max GN=Gma.11078 PE=3 SV=1,83.02,0,no
description,Aldolase-type TIM barrel; FMN-linked oxidoreductases,NULL;
Dus,tRNA-dihydrouridine sy,CUFF.10390.1
         (324 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g067420.1 | tRNA-dihydrouridine synthase | HC | chr8:28151...   545   e-155
Medtr8g067420.3 | tRNA-dihydrouridine synthase | HC | chr8:28151...   414   e-116
Medtr8g067420.2 | tRNA-dihydrouridine synthase | HC | chr8:28151...   414   e-116
Medtr4g094905.1 | tRNA-dihydrouridine synthase-like protein | HC...   128   9e-30
Medtr3g117580.1 | tRNA-dihydrouridine synthase | HC | chr3:55052...   100   2e-21
Medtr8g006745.1 | tRNA-dihydrouridine synthase | HC | chr8:91403...    88   1e-17
Medtr4g094902.1 | tRNA-dihydrouridine synthase-like protein | HC...    51   1e-06

>Medtr8g067420.1 | tRNA-dihydrouridine synthase | HC |
           chr8:28151579-28145915 | 20130731
          Length = 303

 Score =  545 bits (1405), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/303 (85%), Positives = 282/303 (93%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           MDYRNK +LAPMVRVGTLPLRLLA +YGAD  YGEEIVDHKI+KCERRINE +GSTDFVE
Sbjct: 1   MDYRNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVE 60

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGTESVVFRTCDQEK+RVVFQ+GTS+AVRAL AAQLVCNDVAA+DINMGCPKAFSLSGGM
Sbjct: 61  KGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGM 120

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELI DILTTL+RNLS+PVTCKIRLL   HDTVELA+RIEKTGV A+AVHGR 
Sbjct: 121 GAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGRY 180

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
           VLDRPRDPAKW  IADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVM ARGALWN S
Sbjct: 181 VLDRPRDPAKWNGIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMAARGALWNPS 240

Query: 241 IFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSA 300
           IFSPEGEVSYEV ++EYIRKC LWDNDIRSTKHTLR+M + YS+L +PEW+A+VKSE++A
Sbjct: 241 IFSPEGEVSYEVTQKEYIRKCILWDNDIRSTKHTLRDMKSHYSSLEVPEWRAVVKSETTA 300

Query: 301 DLA 303
           ++A
Sbjct: 301 EIA 303


>Medtr8g067420.3 | tRNA-dihydrouridine synthase | HC |
           chr8:28151611-28143518 | 20130731
          Length = 253

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/225 (88%), Positives = 211/225 (93%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           MDYRNK +LAPMVRVGTLPLRLLA +YGAD  YGEEIVDHKI+KCERRINE +GSTDFVE
Sbjct: 1   MDYRNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVE 60

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGTESVVFRTCDQEK+RVVFQ+GTS+AVRAL AAQLVCNDVAA+DINMGCPKAFSLSGGM
Sbjct: 61  KGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGM 120

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELI DILTTL+RNLS+PVTCKIRLL   HDTVELA+RIEKTGV A+AVHGR 
Sbjct: 121 GAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGRY 180

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATG 225
           VLDRPRDPAKW  IADVVSALSIPVIANGDVFEYDDFQRIKSATG
Sbjct: 181 VLDRPRDPAKWNGIADVVSALSIPVIANGDVFEYDDFQRIKSATG 225


>Medtr8g067420.2 | tRNA-dihydrouridine synthase | HC |
           chr8:28151636-28143499 | 20130731
          Length = 257

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/225 (88%), Positives = 211/225 (93%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           MDYRNK +LAPMVRVGTLPLRLLA +YGAD  YGEEIVDHKI+KCERRINE +GSTDFVE
Sbjct: 1   MDYRNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVE 60

Query: 61  KGTESVVFRTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGM 120
           KGTESVVFRTCDQEK+RVVFQ+GTS+AVRAL AAQLVCNDVAA+DINMGCPKAFSLSGGM
Sbjct: 61  KGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGM 120

Query: 121 GAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR 180
           GAALLSKPELI DILTTL+RNLS+PVTCKIRLL   HDTVELA+RIEKTGV A+AVHGR 
Sbjct: 121 GAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGRY 180

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATG 225
           VLDRPRDPAKW  IADVVSALSIPVIANGDVFEYDDFQRIKSATG
Sbjct: 181 VLDRPRDPAKWNGIADVVSALSIPVIANGDVFEYDDFQRIKSATG 225


>Medtr4g094905.1 | tRNA-dihydrouridine synthase-like protein | HC |
           chr4:39249252-39247003 | 20130731
          Length = 375

 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 122/243 (50%), Gaps = 20/243 (8%)

Query: 4   RNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGT 63
           R K+++APMV    LP R+L  +YGA   Y   +      + E+  NE            
Sbjct: 39  RPKLIVAPMVDNSELPYRMLCRKYGAQAAYTPMLHGRIFTEAEKYRNE------------ 86

Query: 64  ESVVFRTCDQEKDRVVF-QMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGA 122
               F TC  ++DR +F Q   +D    L AA+ V      +DIN+GCP+  +  G  GA
Sbjct: 87  ---EFTTC--KEDRPLFVQFCANDPDILLEAARRVEPFTDYVDINLGCPQRIAKKGNYGA 141

Query: 123 ALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTVELAKRIEKTGVSALAVHGRR-- 180
            L+    L+  ++  L  NL +PV+CKIRL  +  DT++ AK +E+ G   LAVHGR   
Sbjct: 142 FLMDNLPLVKSLVEKLALNLEVPVSCKIRLFPKLEDTLKYAKMLEEAGCLLLAVHGRTRD 201

Query: 181 VLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS 240
             D  +  A W  I  V  A+ IPV+ANG++   DD +    ATG   V+ A   L N +
Sbjct: 202 EKDGSKFRADWKAIKAVKEAVRIPVLANGNIRHMDDVKDCLEATGVEGVLSAETLLENPA 261

Query: 241 IFS 243
           +F+
Sbjct: 262 LFA 264


>Medtr3g117580.1 | tRNA-dihydrouridine synthase | HC |
           chr3:55052867-55057843 | 20130731
          Length = 691

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 136/309 (44%), Gaps = 38/309 (12%)

Query: 1   MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVE 60
           +D+R K+ LAP+  VG LP R +    GAD   GE      +  C   +         + 
Sbjct: 334 IDFREKLYLAPLTTVGNLPFRRVCKVLGADITCGE------MAMCTNLLEGQASEWALLR 387

Query: 61  KGTESVVF--RTCDQEKDRVVFQMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSG 118
           + +   +F  + C    D V          RA+   +  C  V  IDINMGCP    ++ 
Sbjct: 388 RHSSEDLFGVQICGAHPDTVG---------RAVELIEKECT-VDFIDINMGCPIDIVVNK 437

Query: 119 GMGAALLSKPELIHDILTTLKRNLSIPVTCKIRL--LSERHDTVELAKRIEKTGVSALAV 176
           G G+ALL+KP  + +++      + IPVT K+R      R+    L       G SA+ +
Sbjct: 438 GAGSALLTKPMRMQNVVEVASGTVDIPVTIKVRTAYFEGRNRIDSLIANFSSWGASAVTI 497

Query: 177 HGRRVLDRPRDPAKWAEIADVV--SALSIPVIANGDVFEYDDFQRIKSATGA-SSVMVAR 233
           HGR    R   PA W  +      +  ++ V+ NGDVF + D+   K+     ++ ++AR
Sbjct: 498 HGRSRQQRYSKPADWDYVYQCTRKAPNNLQVVGNGDVFSFVDWNNHKTECPELATCLIAR 557

Query: 234 GALWNASIFSPEGEVSYEVV---KREYIRKCFL------WDNDIRSTKHTLREML----- 279
           GAL    IF+   E  +  +   +R  I K F+      W +D +  + T R +L     
Sbjct: 558 GALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSY 617

Query: 280 -TRYSNLGL 287
             RY  +GL
Sbjct: 618 TCRYIPVGL 626


>Medtr8g006745.1 | tRNA-dihydrouridine synthase | HC |
           chr8:914036-912884 | 20130731
          Length = 130

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 41/43 (95%)

Query: 183 DRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATG 225
           DRPRDPAKW+ IADVVSALSIPVIANGDVFEYDDFQ IKSATG
Sbjct: 34  DRPRDPAKWSGIADVVSALSIPVIANGDVFEYDDFQHIKSATG 76


>Medtr4g094902.1 | tRNA-dihydrouridine synthase-like protein | HC |
           chr4:39244860-39244543 | 20130731
          Length = 105

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 162 LAKRIEKTGVSALAVHGR--RVLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQR 219
           + K +E+ G   LAVHGR     D  +  A W  I  V  A+ IPV ANG++   DD + 
Sbjct: 1   MLKMLEEAGCLLLAVHGRMRNKKDGHKFRADWKTIKAVKEAVRIPVHANGNIRHMDDVKD 60

Query: 220 IKSATGASSVMVARGALWNASIFSPEGEVSYEVVKREYIRKCFLWDNDI 268
              ATG   V+ A   L N ++F+            EY+  C + +N +
Sbjct: 61  CLKATGVEGVLSAETLLENPALFA-------GFCTEEYVSGCAMENNTL 102