Miyakogusa Predicted Gene

Lj0g3v0165739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165739.1 tr|B9IDP7|B9IDP7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775685 PE=4
SV=1,46.85,0.000000000001,DUF688,Protein of unknown function DUF688;
seg,NULL,CUFF.10385.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091680.1 | hypothetical protein | HC | chr3:41735313-4173...   119   1e-27
Medtr1g007905.1 | hypothetical protein | HC | chr1:618841-616468...    92   2e-19

>Medtr3g091680.1 | hypothetical protein | HC |
           chr3:41735313-41739884 | 20130731
          Length = 170

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 73/110 (66%), Gaps = 6/110 (5%)

Query: 38  RTAISVPFMWEEAPGKPRPCHTRSEPTAAEDGXXXXXXXXXXXXXXXXXAKDDWASPMTV 97
           +T IS+PF WEEAPGKPR  HT+SE                        AK D  SP TV
Sbjct: 11  QTMISIPFKWEEAPGKPRHYHTQSELVNT-----VRTTLELPPRLLFLDAKVDVPSPTTV 65

Query: 98  LDGPYVGRAMSFSSSYRTPREYLNSNFGSSRWSGFRKISKE-DEGSFDIS 146
           LDGPYVGRAMSF+SSYRT RE  NSNFGSSRWSGFRKI+KE DEGSFD S
Sbjct: 66  LDGPYVGRAMSFTSSYRTSRENWNSNFGSSRWSGFRKINKEGDEGSFDFS 115


>Medtr1g007905.1 | hypothetical protein | HC | chr1:618841-616468 |
           20130731
          Length = 210

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 39  TAISVPFMWEEAPGKPRPCHTRSEPTAAEDGXXXXXXXX--XXXXXXXXXAKDDWA-SPM 95
           T IS+PF WEEAPGKPR CHTR E    E                       + +A SP 
Sbjct: 48  TVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALELPPRLLSLERESTGNIYAPSPT 107

Query: 96  TVLDGPYVGRAMSFSSSYRTPREYLNSNFGSSRWSGFRKISKED-EGSFDIS 146
           TVL+GPYVGRA+SF++SYR      + NFGSSRW G +K ++ D EGSFD S
Sbjct: 108 TVLEGPYVGRAVSFTTSYRDNNNKDSVNFGSSRWGGLKKNNRIDREGSFDFS 159