Miyakogusa Predicted Gene

Lj0g3v0165409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165409.1 tr|G7IYB6|G7IYB6_MEDTR Protein
TRIGALACTOSYLDIACYLGLYCEROL OS=Medicago truncatula GN=MTR_3g005100
PE,85.44,0,ABC TRANSPORTER PERMEASE PROTEIN-RELATED,NULL;
Permease,Permease domain; TIGR00056: conserved hypoth,CUFF.10374.1
         (367 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005100.1 | ABC transporter | HC | chr3:61357-65017 | 2013...   602   e-172
Medtr3g005100.3 | ABC transporter | HC | chr3:61362-65017 | 2013...   602   e-172
Medtr3g005100.2 | ABC transporter | HC | chr3:61362-65017 | 2013...   602   e-172
Medtr3g008040.1 | ABC transporter | LC | chr3:1300331-1295818 | ...   492   e-139

>Medtr3g005100.1 | ABC transporter | HC | chr3:61357-65017 |
           20130731
          Length = 355

 Score =  602 bits (1551), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/371 (82%), Positives = 323/371 (87%), Gaps = 20/371 (5%)

Query: 1   MQAASYSHPVFCFSCRTNANISP----VKIRAPYPSHLNWKCEFNGRPHIFKNSAIPIKP 56
           MQ A YSHPVFCFSCR N +I+P    VKIRAPY S L+ KCEFN RPHI+ NS I IKP
Sbjct: 1   MQTAFYSHPVFCFSCR-NLSINPKSGLVKIRAPYLSQLDSKCEFNRRPHIY-NSPITIKP 58

Query: 57  NRLYVLPDTGDGHPSASMIDGEMNTNHASASIIDDEMNPNHAPNSISPPFLSNWSPPRYL 116
           NRL+VLP+T DGHP+AS +D              DEMN NHAPN ISP FLSNWSPPRYL
Sbjct: 59  NRLFVLPNTDDGHPTASTMD--------------DEMNTNHAPNVISPMFLSNWSPPRYL 104

Query: 117 WRGLSVLVLAGQVIMKILKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVRE 176
           WRGLSVL+LAGQVIMKILKGK+HWRNTLQQLERVGP+SVGVCLLTSAFVGMAFTIQFVRE
Sbjct: 105 WRGLSVLILAGQVIMKILKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVRE 164

Query: 177 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 236
           FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS
Sbjct: 165 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 224

Query: 237 DPVDYLVTPRVIASCIAXXXXXXXXXXXGMASSAILADGVYGVSINIILDSAQRALRPWD 296
           DPVDYLVTPRVIASCIA           G+ASSA+LADGVYG+SINIILDSAQR+LR WD
Sbjct: 225 DPVDYLVTPRVIASCIALPLLTLLCFTLGLASSALLADGVYGISINIILDSAQRSLRAWD 284

Query: 297 IISAMIKSQVFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVLSLVGIFIADFALSCCFF 356
           IISAMIKS  FGAIISIVSCAWGVTTMGGAKGVGESTTSAVV+SLVGIFIADFALSCCFF
Sbjct: 285 IISAMIKSGAFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFALSCCFF 344

Query: 357 QGAGDQLKNCM 367
           QGAGDQLKNC+
Sbjct: 345 QGAGDQLKNCV 355


>Medtr3g005100.3 | ABC transporter | HC | chr3:61362-65017 |
           20130731
          Length = 355

 Score =  602 bits (1551), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/371 (82%), Positives = 323/371 (87%), Gaps = 20/371 (5%)

Query: 1   MQAASYSHPVFCFSCRTNANISP----VKIRAPYPSHLNWKCEFNGRPHIFKNSAIPIKP 56
           MQ A YSHPVFCFSCR N +I+P    VKIRAPY S L+ KCEFN RPHI+ NS I IKP
Sbjct: 1   MQTAFYSHPVFCFSCR-NLSINPKSGLVKIRAPYLSQLDSKCEFNRRPHIY-NSPITIKP 58

Query: 57  NRLYVLPDTGDGHPSASMIDGEMNTNHASASIIDDEMNPNHAPNSISPPFLSNWSPPRYL 116
           NRL+VLP+T DGHP+AS +D              DEMN NHAPN ISP FLSNWSPPRYL
Sbjct: 59  NRLFVLPNTDDGHPTASTMD--------------DEMNTNHAPNVISPMFLSNWSPPRYL 104

Query: 117 WRGLSVLVLAGQVIMKILKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVRE 176
           WRGLSVL+LAGQVIMKILKGK+HWRNTLQQLERVGP+SVGVCLLTSAFVGMAFTIQFVRE
Sbjct: 105 WRGLSVLILAGQVIMKILKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVRE 164

Query: 177 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 236
           FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS
Sbjct: 165 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 224

Query: 237 DPVDYLVTPRVIASCIAXXXXXXXXXXXGMASSAILADGVYGVSINIILDSAQRALRPWD 296
           DPVDYLVTPRVIASCIA           G+ASSA+LADGVYG+SINIILDSAQR+LR WD
Sbjct: 225 DPVDYLVTPRVIASCIALPLLTLLCFTLGLASSALLADGVYGISINIILDSAQRSLRAWD 284

Query: 297 IISAMIKSQVFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVLSLVGIFIADFALSCCFF 356
           IISAMIKS  FGAIISIVSCAWGVTTMGGAKGVGESTTSAVV+SLVGIFIADFALSCCFF
Sbjct: 285 IISAMIKSGAFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFALSCCFF 344

Query: 357 QGAGDQLKNCM 367
           QGAGDQLKNC+
Sbjct: 345 QGAGDQLKNCV 355


>Medtr3g005100.2 | ABC transporter | HC | chr3:61362-65017 |
           20130731
          Length = 355

 Score =  602 bits (1551), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/371 (82%), Positives = 323/371 (87%), Gaps = 20/371 (5%)

Query: 1   MQAASYSHPVFCFSCRTNANISP----VKIRAPYPSHLNWKCEFNGRPHIFKNSAIPIKP 56
           MQ A YSHPVFCFSCR N +I+P    VKIRAPY S L+ KCEFN RPHI+ NS I IKP
Sbjct: 1   MQTAFYSHPVFCFSCR-NLSINPKSGLVKIRAPYLSQLDSKCEFNRRPHIY-NSPITIKP 58

Query: 57  NRLYVLPDTGDGHPSASMIDGEMNTNHASASIIDDEMNPNHAPNSISPPFLSNWSPPRYL 116
           NRL+VLP+T DGHP+AS +D              DEMN NHAPN ISP FLSNWSPPRYL
Sbjct: 59  NRLFVLPNTDDGHPTASTMD--------------DEMNTNHAPNVISPMFLSNWSPPRYL 104

Query: 117 WRGLSVLVLAGQVIMKILKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVRE 176
           WRGLSVL+LAGQVIMKILKGK+HWRNTLQQLERVGP+SVGVCLLTSAFVGMAFTIQFVRE
Sbjct: 105 WRGLSVLILAGQVIMKILKGKVHWRNTLQQLERVGPKSVGVCLLTSAFVGMAFTIQFVRE 164

Query: 177 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 236
           FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS
Sbjct: 165 FTRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGS 224

Query: 237 DPVDYLVTPRVIASCIAXXXXXXXXXXXGMASSAILADGVYGVSINIILDSAQRALRPWD 296
           DPVDYLVTPRVIASCIA           G+ASSA+LADGVYG+SINIILDSAQR+LR WD
Sbjct: 225 DPVDYLVTPRVIASCIALPLLTLLCFTLGLASSALLADGVYGISINIILDSAQRSLRAWD 284

Query: 297 IISAMIKSQVFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVLSLVGIFIADFALSCCFF 356
           IISAMIKS  FGAIISIVSCAWGVTTMGGAKGVGESTTSAVV+SLVGIFIADFALSCCFF
Sbjct: 285 IISAMIKSGAFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVISLVGIFIADFALSCCFF 344

Query: 357 QGAGDQLKNCM 367
           QGAGDQLKNC+
Sbjct: 345 QGAGDQLKNCV 355


>Medtr3g008040.1 | ABC transporter | LC | chr3:1300331-1295818 |
           20130731
          Length = 540

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/370 (71%), Positives = 278/370 (75%), Gaps = 60/370 (16%)

Query: 1   MQAASYSHPVFCFSCR---TNANISPVKIRAPYPSHLNWKCEFNGRPHIFKNSAIPIKPN 57
           MQ   YSHPVFCFSCR   TN   S VKI APY S LN KCEFN RPHI+ NS I IKPN
Sbjct: 228 MQTTFYSHPVFCFSCRNLSTNPKSSLVKIHAPYLSQLNSKCEFNRRPHIY-NSPITIKPN 286

Query: 58  RLYVLPDTGDGHPSASMIDGEMNTNHASASIIDDEMNPNHAPNSISPPFLSNWSPPRYLW 117
           RL+                         AS +DD+MN NHAPN ISP FLSNWS PRYLW
Sbjct: 287 RLF-------------------------ASTVDDKMNTNHAPNVISPMFLSNWSLPRYLW 321

Query: 118 RGLSVLVLAGQVIMKILKGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREF 177
           R LSVL+LAGQ IMKILKGK+HWRNTLQQ ERVGP+SVGVCLLTSAFVGMAFTIQFVREF
Sbjct: 322 RDLSVLILAGQEIMKILKGKVHWRNTLQQFERVGPKSVGVCLLTSAFVGMAFTIQFVREF 381

Query: 178 TRLGLNRSVGGVLALAFSRELSPVVTAIVVAGRIGSAFAAELGTMQVSEQIDTLRVLGSD 237
           TRLGLNRSVGGV ALAFSREL PVVTAIVVA RIGSAFAAELGTMQVSE IDT       
Sbjct: 382 TRLGLNRSVGGVSALAFSRELRPVVTAIVVADRIGSAFAAELGTMQVSEPIDT------- 434

Query: 238 PVDYLVTPRVIASCIAXXXXXXXXXXXGMASSAILADGVYGVSINIILDSAQRALRPWDI 297
             D+L                        ASSA+LADGVYG+SINIILDSAQR+LR WDI
Sbjct: 435 KSDWL------------------------ASSALLADGVYGISINIILDSAQRSLRAWDI 470

Query: 298 ISAMIKSQVFGAIISIVSCAWGVTTMGGAKGVGESTTSAVVLSLVGIFIADFALSCCFFQ 357
           ISAMIKS  FGAIISIVSCAWGVTT+GGAKGVGESTTSAVV+SLVGIFIADFALSCC FQ
Sbjct: 471 ISAMIKSGAFGAIISIVSCAWGVTTIGGAKGVGESTTSAVVISLVGIFIADFALSCCLFQ 530

Query: 358 GAGDQLKNCM 367
           GAGDQLKNC+
Sbjct: 531 GAGDQLKNCI 540