Miyakogusa Predicted Gene

Lj0g3v0165119.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165119.1 Non Characterized Hit- tr|C5YD36|C5YD36_SORBI
Putative uncharacterized protein Sb06g024190
OS=Sorghu,47.37,0.000000000007,seg,NULL,CUFF.10342.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g007365.1 | PPR containing protein, putative | HC | chr8:1...   148   1e-36
Medtr8g031520.1 | PPR containing plant protein | HC | chr8:11834...   147   3e-36
Medtr2g025360.1 | hypothetical protein | LC | chr2:9033834-90342...    47   4e-06

>Medtr8g007365.1 | PPR containing protein, putative | HC |
           chr8:1488848-1489246 | 20130731
          Length = 132

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 76/81 (93%)

Query: 48  LSVTCSISKIHNYGTVDYERRPIVRWNDIYRRISLMENPELGSVSVLNQWENEGKNLTKW 107
           +SVTCSISKIHNYGT+DYER+P ++WN IY+RIS+MENPELGS SVLNQWENEG+NLTKW
Sbjct: 51  VSVTCSISKIHNYGTLDYERKPNLKWNAIYKRISMMENPELGSASVLNQWENEGRNLTKW 110

Query: 108 ELSRVVKELRKYRRHQRALEV 128
           EL RVVKELRKYRRH RAL+V
Sbjct: 111 ELCRVVKELRKYRRHDRALQV 131


>Medtr8g031520.1 | PPR containing plant protein | HC |
           chr8:11834804-11831456 | 20130731
          Length = 300

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 76/81 (93%)

Query: 48  LSVTCSISKIHNYGTVDYERRPIVRWNDIYRRISLMENPELGSVSVLNQWENEGKNLTKW 107
           +SVTCSISKIHNYGT+DYER+P ++WN IY+RIS+M+NPELGS SVLNQWENEG+NLTKW
Sbjct: 78  VSVTCSISKIHNYGTLDYERKPNLKWNAIYKRISMMQNPELGSASVLNQWENEGRNLTKW 137

Query: 108 ELSRVVKELRKYRRHQRALEV 128
           EL RVVKELRKYR+H RAL+V
Sbjct: 138 ELCRVVKELRKYRKHDRALQV 158


>Medtr2g025360.1 | hypothetical protein | LC | chr2:9033834-9034233
           | 20130731
          Length = 66

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 21/23 (91%)

Query: 83  MENPELGSVSVLNQWENEGKNLT 105
           MENPEL S SVLNQWENEGKNLT
Sbjct: 1   MENPELSSASVLNQWENEGKNLT 23