Miyakogusa Predicted Gene

Lj0g3v0165099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0165099.1 Non Characterized Hit- tr|A5BP26|A5BP26_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.31,0,GAG-POL-RELATED RETROTRANSPOSON,NULL;
UBN2_3,NULL,CUFF.10341.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g039280.1 | hypothetical protein | LC | chr7:14583454-1458...    89   6e-18
Medtr4g048330.1 | hypothetical protein | LC | chr4:17127732-1712...    74   2e-13
Medtr6g477740.1 | hypothetical protein | LC | chr6:28521730-2852...    67   4e-11
Medtr2g039460.1 | hypothetical protein | LC | chr2:17293425-1729...    65   8e-11
Medtr3g463780.1 | transmembrane protein, putative | LC | chr3:25...    65   1e-10
Medtr1262s0010.1 | hypothetical protein | HC | scaffold1262:34-1...    64   2e-10
Medtr4g461050.1 | hypothetical protein | LC | chr4:22466787-2246...    63   4e-10
Medtr7g007900.1 | hypothetical protein | LC | chr7:1747318-17477...    61   2e-09
Medtr5g007160.1 | hypothetical protein | LC | chr5:1226844-12262...    56   5e-08
Medtr4g116400.1 | hypothetical protein | LC | chr4:48215026-4821...    50   3e-06

>Medtr7g039280.1 | hypothetical protein | LC |
           chr7:14583454-14584237 | 20130731
          Length = 227

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 172 LKTISDEFLTYKPIVNCVC------GVIQLLLAHSETEHVISFLMGLNDSFSQVRGSLLL 225
           +K++ +E  +++PI NC C         ++   H   + ++ FL GLND FS VR  +LL
Sbjct: 1   MKSLWEELSSHRPIPNCACVHPCRCASSKVAKIHRNEDQIMQFLTGLNDQFSVVRTQVLL 60

Query: 226 MGPIPPINKVFSFVIQEENLREVSTGSGSSDKTSLAFTA--QASSQGGTRSFDSTEKAKQ 283
           + P+P +NKV+S V+QEE+     T    S+ TS+   A     SQGG +SF       Q
Sbjct: 61  VDPLPSLNKVYSLVVQEESNNASITQLSVSEDTSIQVNATDNRKSQGGVKSF------SQ 114

Query: 284 SKKDRPICSHCGLPGRTAAKCFKLHGYSPGMKPKSKHQTSAVAGQASGA 332
            K  R  C+ C     T   C+  HGY    KP  +    +     +GA
Sbjct: 115 PKPTR-FCTFCNCTNHTVDFCYMKHGYPNVNKPSPRVNVVSQEDSETGA 162


>Medtr4g048330.1 | hypothetical protein | LC |
           chr4:17127732-17129246 | 20130731
          Length = 422

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 8/195 (4%)

Query: 171 KLKTISDEFLTYKPIVNCVCGV---IQLLLAHSE---TEHVISFLMGLNDSFSQVRGSLL 224
           K+K++ +E  +++P+  C C      + + A  E    + VI FL GL+D+FS V+  +L
Sbjct: 82  KMKSLWEELNSHRPMHVCTCPYPCRCESMRAAREFRMEDQVIQFLTGLHDNFSVVKTQVL 141

Query: 225 LMGPIPPINKVFSFVIQEENLREVSTGSGSSDKTSLAFTAQASSQGGTRSFDSTEKAKQS 284
           LM P+P INKV+S V+QEE+           D + L     A    G     S     QS
Sbjct: 142 LMDPLPSINKVYSMVVQEESNNTAPPPISIEDSSILVNALDARKLYGRG--KSPSGYSQS 199

Query: 285 KKDRPICSHCGLPGRTAAKCFKLHGYSPGMKPKSKHQTSAVAGQASGAFQQTPGVQNAVT 344
           K     C+ C     T   C++ HGY    K  +                       + T
Sbjct: 200 KNTSRYCTFCHRNNHTVDFCYQKHGYPNANKSLAASNVVTTESSTDSQSIGEGSSSISQT 259

Query: 345 TLSPEQFNQLIQLLK 359
            L+ EQ+  L+ LL+
Sbjct: 260 GLTQEQYVHLVSLLQ 274


>Medtr6g477740.1 | hypothetical protein | LC |
           chr6:28521730-28520619 | 20130731
          Length = 267

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 62/171 (36%)

Query: 73  ALSVKNKVSFIDGSLPYPDASDPHHRAWNRSNNVVISWIFNFVSKEIVANVMYSATAMEI 132
           AL VKNK++FI+ ++  P+A D      NR+                           ++
Sbjct: 4   ALEVKNKLAFINDAIQQPEALD-----LNRA---------------------------DV 31

Query: 133 WNNLRERFAQKNDPHVFQLCRELMSLHQGSDSVSVSYTKLKTISDEFLTYKPIVNCVCGV 192
           W +L+ERF++ +   +  L   + +L QG+ +++  Y                       
Sbjct: 32  WEDLKERFSKADRIRISSLRSCINNLKQGASTLAHVYRV--------------------- 70

Query: 193 IQLLLAHSETEHVISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFVIQEE 243
                     + ++ FL+GLND FS V+  +LLM P+P +NKV+S VIQEE
Sbjct: 71  ---------EDQIMQFLIGLNDQFSIVKTQILLMDPLPSLNKVYSLVIQEE 112


>Medtr2g039460.1 | hypothetical protein | LC |
           chr2:17293425-17293724 | 20130731
          Length = 99

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 48/80 (60%)

Query: 142 QKNDPHVFQLCRELMSLHQGSDSVSVSYTKLKTISDEFLTYKPIVNCVCGVIQLLLAHSE 201
           Q N  H+FQL  EL+    GS S+S  +TK+K + +E   Y PI  C CG IQL + +  
Sbjct: 7   QINGLHIFQLWCELIECTLGSLSMSDYFTKIKGLWEEINEYNPIHTCNCGGIQLPINYLH 66

Query: 202 TEHVISFLMGLNDSFSQVRG 221
           T +V+ FL GLN+S S V G
Sbjct: 67  TNYVLYFLTGLNESISHVTG 86


>Medtr3g463780.1 | transmembrane protein, putative | LC |
           chr3:25571288-25572083 | 20130731
          Length = 173

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 4/101 (3%)

Query: 173 KTISDEFLTYKPIVNCVCGVIQLLLAHSETEHVISFLMGLNDSFSQVRGSLLLMGPIPPI 232
           K I+ EF  Y  I+ C  G I+L   +   + +I FL GLN+SFS V+  +LLM P+P I
Sbjct: 4   KMINCEFAKY--ILRC--GSIRLAKLYRTKDQIIQFLTGLNESFSVVKTQILLMDPLPSI 59

Query: 233 NKVFSFVIQEENLREVSTGSGSSDKTSLAFTAQASSQGGTR 273
           NKV+S V+QEE   +V +   + D++S++     S +   R
Sbjct: 60  NKVYSSVVQEEIHYDVVSTLVTIDESSISINVSDSRKVYPR 100


>Medtr1262s0010.1 | hypothetical protein | HC | scaffold1262:34-1511
           | 20130731
          Length = 404

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 205 VISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFVIQEENLREVS-TGSGSSDKTSLAFT 263
           V  FL GLN  F +VRG +L   PIPPI +VF+ V +EE+ R+V            +  +
Sbjct: 185 VFKFLAGLNVEFDEVRGRILGRNPIPPIGEVFAEVRREESRRQVMLEKKKVVVPPPVEGS 244

Query: 264 AQASSQGGTRSFDSTEKAKQSKKDRPICSHCGLPGRTAAKCFKLHGYSPGMKPKSKHQTS 323
           A A  Q   +SF +      +     +C +CG    T   CFKLHG     +P      +
Sbjct: 245 ALAVPQVNHKSFCNPRGGDNT---HLVCDYCGRNRHTQETCFKLHG-----RP-----NN 291

Query: 324 AVAGQASGAFQQTPGVQNAVTT-LSPEQFNQLIQLLK 359
           + AG+     +  P   NA ++  + EQ + L++LLK
Sbjct: 292 SKAGKFGD--RPMPTTSNAASSPFTKEQMDHLLKLLK 326


>Medtr4g461050.1 | hypothetical protein | LC |
           chr4:22466787-22464225 | 20130731
          Length = 397

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 186 VNCVCGVIQLLLAHSETEHVISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFVIQEENL 245
           ++C C  ++    +    + I FL+GLN+ FS V+  +LLM PIPP+NK+FS  +Q E  
Sbjct: 236 LHCSCEFMRNARQNHILPYAIRFLIGLNEYFSMVKSQILLMDPIPPMNKIFSMALQHERQ 295

Query: 246 REVSTGSGSSDKTSLAFTAQASSQGGTRSFDSTEKAKQSKKDRPICSHCGLPGRTAAKCF 305
              +      D +       +    G  S     +   SK    +C+ CG        C+
Sbjct: 296 GHFAL---VKDDSVFINVTDSRKFKGDNSGKFYPQGSNSKNVIRVCTFCGRNNHIVETCY 352

Query: 306 KLHGYSPGMKPKSKHQTS 323
           +  G  P ++ K +++++
Sbjct: 353 EKLGVPPHLQSKRQNESA 370


>Medtr7g007900.1 | hypothetical protein | LC | chr7:1747318-1747734
           | 20130731
          Length = 138

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 203 EHVISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFVIQEENLREVSTGSGSSDKTSLAF 262
           +HVI FL+ LND+FS V+  + L+ P+P +NKV+S VIQEE+  +V   S S D+++L F
Sbjct: 11  DHVIQFLISLNDNFSVVKSQVPLIDPLPSMNKVYSHVIQEESSNDVFPYSSSIDESNLLF 70

Query: 263 TA 264
            A
Sbjct: 71  NA 72


>Medtr5g007160.1 | hypothetical protein | LC | chr5:1226844-1226222
           | 20130731
          Length = 176

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 188 CVCGVIQLLLAHSETEHVISFLMGLNDSFSQVRGSLLLMGPIPPINKVFSFVIQEENLRE 247
           C C +   +  +   E++I FL GLN ++S VR  +LLM P+P I+KV+S V Q+     
Sbjct: 23  CTCSLSNYVHNYKNMEYIICFLKGLNANYSNVRTQILLMDPLPSISKVYSSVSQQ----- 77

Query: 248 VSTGSGSSDKT---SLAFT--AQASSQGGTRSFDSTEKAKQSKKD 287
              G   SD +   S+ +T     S+Q   R + S    + SK D
Sbjct: 78  ---GFNHSDDSTAVSINYTNPKNLSNQSKGRGYQSKTHIEASKND 119


>Medtr4g116400.1 | hypothetical protein | LC |
           chr4:48215026-48215385 | 20130731
          Length = 119

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 41  YYLHHSNGPGLVLVSQPLTGSNYNTWSRSMLVALSVKNKVSFIDGSLPYPDASDPHHRAW 100
           Y++H SNGP  V ++  LT SN +T +RS   +L  KNK  F+DG +  P      H+A 
Sbjct: 39  YHVHASNGPSFVAITLVLTHSNQHTSARSTFCSLGAKNKFDFVDGMILVPTHFYFSHKAQ 98

Query: 101 NRSN 104
            R N
Sbjct: 99  TRYN 102