Miyakogusa Predicted Gene

Lj0g3v0164859.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164859.2 tr|B4L585|B4L585_DROMO GI21567 OS=Drosophila
mojavensis GN=GI21567 PE=4 SV=1,26.36,0.0008,seg,NULL,CUFF.10343.2
         (231 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g026900.2 | cleavage stimulation factor | HC | chr6:909410...   319   1e-87
Medtr6g026900.1 | cleavage stimulation factor | HC | chr6:909424...   319   1e-87

>Medtr6g026900.2 | cleavage stimulation factor | HC |
           chr6:9094104-9083521 | 20130731
          Length = 721

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 185/232 (79%), Gaps = 3/232 (1%)

Query: 1   MDLWPCSSNYLDQLARQEWLAKNINKRVEKSVMPNGSALLDKSSMATISTISSKVIYPDT 60
           MDLWPCSSN LD L+RQEWL KN  K+VEKS+M NG+  +DK  +A+IST SSKV+YPDT
Sbjct: 492 MDLWPCSSNDLDNLSRQEWLVKN-TKKVEKSIMLNGTTFIDKGPVASISTTSSKVVYPDT 550

Query: 61  SKMVLYDPKQNPVAGS-GTNACNEIXXXXXXXXXXXXXXXXXVEGPTPNVDIVLSICLQS 119
           SKM++YDPK NP  G+ GTNA +EI                 V+GPTPNVDIVLSICLQS
Sbjct: 551 SKMLIYDPKHNPGTGAAGTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQS 610

Query: 120 DLPTGQSGKKTGAPTQSPAGPAPATSELSGSNKSHPVQSGLSLKRTGNRQHGKRKELDRQ 179
           DLPTGQS K  G P+Q PAGPAPATSELSGS+KSHPVQSGLS  + G +Q+GKRK+LD Q
Sbjct: 611 DLPTGQSVK-VGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQ 669

Query: 180 EDDDTTTVQSQPLPRDAFRIRQYHKARASSTSQTGSVSYGSAFSGDLSGSTG 231
           E+DDT +VQSQPLP+DAFRIRQ+ KARA STSQTGSVSYGSA SGDLSGSTG
Sbjct: 670 EEDDTKSVQSQPLPQDAFRIRQFQKARAGSTSQTGSVSYGSALSGDLSGSTG 721


>Medtr6g026900.1 | cleavage stimulation factor | HC |
           chr6:9094247-9083521 | 20130731
          Length = 721

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 185/232 (79%), Gaps = 3/232 (1%)

Query: 1   MDLWPCSSNYLDQLARQEWLAKNINKRVEKSVMPNGSALLDKSSMATISTISSKVIYPDT 60
           MDLWPCSSN LD L+RQEWL KN  K+VEKS+M NG+  +DK  +A+IST SSKV+YPDT
Sbjct: 492 MDLWPCSSNDLDNLSRQEWLVKN-TKKVEKSIMLNGTTFIDKGPVASISTTSSKVVYPDT 550

Query: 61  SKMVLYDPKQNPVAGS-GTNACNEIXXXXXXXXXXXXXXXXXVEGPTPNVDIVLSICLQS 119
           SKM++YDPK NP  G+ GTNA +EI                 V+GPTPNVDIVLSICLQS
Sbjct: 551 SKMLIYDPKHNPGTGAAGTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQS 610

Query: 120 DLPTGQSGKKTGAPTQSPAGPAPATSELSGSNKSHPVQSGLSLKRTGNRQHGKRKELDRQ 179
           DLPTGQS K  G P+Q PAGPAPATSELSGS+KSHPVQSGLS  + G +Q+GKRK+LD Q
Sbjct: 611 DLPTGQSVK-VGIPSQLPAGPAPATSELSGSSKSHPVQSGLSHMQPGRKQYGKRKQLDSQ 669

Query: 180 EDDDTTTVQSQPLPRDAFRIRQYHKARASSTSQTGSVSYGSAFSGDLSGSTG 231
           E+DDT +VQSQPLP+DAFRIRQ+ KARA STSQTGSVSYGSA SGDLSGSTG
Sbjct: 670 EEDDTKSVQSQPLPQDAFRIRQFQKARAGSTSQTGSVSYGSALSGDLSGSTG 721