Miyakogusa Predicted Gene

Lj0g3v0164349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164349.1 tr|F2DZR3|F2DZR3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.69,0.0000000000007,SUBFAMILY NOT NAMED,NULL; AMSH,NULL;
seg,NULL,CUFF.10401.1
         (357 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC | chr6:3...   519   e-147
Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC | chr8:4...   472   e-133
Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC | chr8:4...   310   1e-84
Medtr4g121470.2 | AMSH-like ubiquitin thioesterase-like protein ...   168   7e-42
Medtr4g121470.3 | AMSH-like ubiquitin thioesterase-like protein ...   168   8e-42
Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein ...   168   9e-42

>Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC |
           chr6:31340337-31333153 | 20130731
          Length = 513

 Score =  519 bits (1337), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/357 (73%), Positives = 292/357 (81%), Gaps = 4/357 (1%)

Query: 1   MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLR 60
           M SSSS+ G INIA SAQKLDVDNRI+LRFY+RIADNILRQADIFRAE+NIIDLYVMLLR
Sbjct: 1   MRSSSSTSGEINIAMSAQKLDVDNRISLRFYYRIADNILRQADIFRAERNIIDLYVMLLR 60

Query: 61  FSSLVTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQN 120
           FSSLV+ETIPRHR+YRSSP ++                       QKINELNSR+ +QQN
Sbjct: 61  FSSLVSETIPRHREYRSSPSTKKQSLKKRLLISLNELEKLKPLVQQKINELNSRNAHQQN 120

Query: 121 GRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRR 180
           GRG  HSNNSV  FS  KKQTL   GQIK VR TA+EFVYQGS GQQ++YVRPVEEQVRR
Sbjct: 121 GRGNFHSNNSVD-FSSAKKQTLPGNGQIKAVRETAKEFVYQGSSGQQFTYVRPVEEQVRR 179

Query: 181 LSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSL 240
           LSLTLPPPK+ETLSRHSI GPNGLNGQWRPPTT  G+RYPTNIDLSPV++P   SLQ  L
Sbjct: 180 LSLTLPPPKQETLSRHSIFGPNGLNGQWRPPTTGTGIRYPTNIDLSPVELP---SLQRPL 236

Query: 241 EDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPS 300
           ED S + KDNSI E +K DL+SI T SEDSQPQ+AQE PSLISFE  +T A++E+IRQPS
Sbjct: 237 EDASSSNKDNSIEELHKLDLNSIPTDSEDSQPQRAQESPSLISFEETDTSAQVELIRQPS 296

Query: 301 PPPVLAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLA 357
           PPPVLAEV DLVPAVSP VNEAGC T+IPSSDS VRAESPLQLHISTA+M++FMKLA
Sbjct: 297 PPPVLAEVHDLVPAVSPHVNEAGCKTEIPSSDSCVRAESPLQLHISTALMENFMKLA 353


>Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43936023-43927548 | 20130731
          Length = 511

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/357 (69%), Positives = 274/357 (76%), Gaps = 7/357 (1%)

Query: 1   MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLR 60
           MT SS    TI+IAA  QK+DVDNR +LR Y+RIADNIL+QADIFRAEKNIIDLY+MLLR
Sbjct: 2   MTCSSD---TISIAARTQKVDVDNRFSLRIYYRIADNILKQADIFRAEKNIIDLYIMLLR 58

Query: 61  FSSLVTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQN 120
           +SSLV+ETIPRHRDYR+SPQS+                       QKINELNSR  YQ +
Sbjct: 59  YSSLVSETIPRHRDYRTSPQSKKELLRKKLLTSVIELEKLKPLAQQKINELNSRKSYQHS 118

Query: 121 GRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRR 180
           GR    SN S   FSPVKKQT+ASY +IK VR TA EFVY+GS  QQY  VRPVE+ ++R
Sbjct: 119 GRDTFRSNYSTG-FSPVKKQTMASYDEIKAVRQTAGEFVYRGSKAQQYPCVRPVEDSMKR 177

Query: 181 LSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSL 240
           LSLTLPPPKEETLSRHSILGPNGL G W+PPT+DKGVRYPT IDLSPV+IP   SL  SL
Sbjct: 178 LSLTLPPPKEETLSRHSILGPNGLKGPWQPPTSDKGVRYPTIIDLSPVEIP---SLHQSL 234

Query: 241 EDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPS 300
           ED S NKKDNSI+E  K D++S LTQSED Q + A E PSLISFE  E  A I+VIRQPS
Sbjct: 235 EDGSQNKKDNSISEHNKLDVESTLTQSEDCQVKHADETPSLISFEETEDFAPIKVIRQPS 294

Query: 301 PPPVLAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLA 357
           PPPVLAEVQDLVP VSP V+EAGC T+ P SDSF RAESPLQLHISTAMM SFMKLA
Sbjct: 295 PPPVLAEVQDLVPTVSPHVDEAGCKTETPLSDSFGRAESPLQLHISTAMMGSFMKLA 351


>Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43935969-43927719 | 20130731
          Length = 373

 Score =  310 bits (795), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 160/216 (74%), Positives = 176/216 (81%), Gaps = 3/216 (1%)

Query: 142 LASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLTLPPPKEETLSRHSILGP 201
           +ASY +IK VR TA EFVY+GS  QQY  VRPVE+ ++RLSLTLPPPKEETLSRHSILGP
Sbjct: 1   MASYDEIKAVRQTAGEFVYRGSKAQQYPCVRPVEDSMKRLSLTLPPPKEETLSRHSILGP 60

Query: 202 NGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDESLNKKDNSIAEPYKSDLD 261
           NGL G W+PPT+DKGVRYPT IDLSPV+IP   SL  SLED S NKKDNSI+E  K D++
Sbjct: 61  NGLKGPWQPPTSDKGVRYPTIIDLSPVEIP---SLHQSLEDGSQNKKDNSISEHNKLDVE 117

Query: 262 SILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAEVQDLVPAVSPQVNE 321
           S LTQSED Q + A E PSLISFE  E  A I+VIRQPSPPPVLAEVQDLVP VSP V+E
Sbjct: 118 STLTQSEDCQVKHADETPSLISFEETEDFAPIKVIRQPSPPPVLAEVQDLVPTVSPHVDE 177

Query: 322 AGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLA 357
           AGC T+ P SDSF RAESPLQLHISTAMM SFMKLA
Sbjct: 178 AGCKTETPLSDSFGRAESPLQLHISTAMMGSFMKLA 213


>Medtr4g121470.2 | AMSH-like ubiquitin thioesterase-like protein |
           HC | chr4:50216958-50211331 | 20130731
          Length = 427

 Score =  168 bits (426), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 183/360 (50%), Gaps = 26/360 (7%)

Query: 10  TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
           TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2   TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61

Query: 70  PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
           P HRDY+++  +                        +++++LN   +     ++NG    
Sbjct: 62  PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121

Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
              S NS   +  V K+  +S    K       +  ++ +    Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179

Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
            +P P +ETLSRHS LGPNGL GQW  P+ +  V+YP++ DL       TH+   S    
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232

Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
            L    +    P  S +DSIL+  +        E  S +  E  E   +   I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292

Query: 304 VLAEV---QDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPL---QLHISTAMMDSFMKLA 357
           VLA+V   +  +P         G     P+  S      P     LHI   MM+ F++LA
Sbjct: 293 VLAQVHPERACIPHSKVADPRPG-----PAKSSHDSGHGPTTFQHLHIPVKMMEDFLRLA 347


>Medtr4g121470.3 | AMSH-like ubiquitin thioesterase-like protein |
           HC | chr4:50216958-50213068 | 20130731
          Length = 391

 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 183/360 (50%), Gaps = 26/360 (7%)

Query: 10  TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
           TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2   TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61

Query: 70  PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
           P HRDY+++  +                        +++++LN   +     ++NG    
Sbjct: 62  PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121

Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
              S NS   +  V K+  +S    K       +  ++ +    Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179

Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
            +P P +ETLSRHS LGPNGL GQW  P+ +  V+YP++ DL       TH+   S    
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232

Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
            L    +    P  S +DSIL+  +        E  S +  E  E   +   I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292

Query: 304 VLAEV---QDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPL---QLHISTAMMDSFMKLA 357
           VLA+V   +  +P         G     P+  S      P     LHI   MM+ F++LA
Sbjct: 293 VLAQVHPERACIPHSKVADPRPG-----PAKSSHDSGHGPTTFQHLHIPVKMMEDFLRLA 347


>Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein |
           HC | chr4:50216958-50208834 | 20130731
          Length = 509

 Score =  168 bits (425), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 182/360 (50%), Gaps = 26/360 (7%)

Query: 10  TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
           TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2   TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61

Query: 70  PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
           P HRDY+++  +                        +++++LN   +     ++NG    
Sbjct: 62  PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121

Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
              S NS   +  V K+  +S    K       +  ++ +    Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179

Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
            +P P +ETLSRHS LGPNGL GQW  P+ +  V+YP++ DL       TH+   S    
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232

Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
            L    +    P  S +DSIL+  +        E  S +  E  E   +   I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292

Query: 304 VLAEVQ---DLVPAVSPQVNEAGCLTDIPSSDSFVRAESPL---QLHISTAMMDSFMKLA 357
           VLA+V      +P         G     P+  S      P     LHI   MM+ F++LA
Sbjct: 293 VLAQVHPERACIPHSKVADPRPG-----PAKSSHDSGHGPTTFQHLHIPVKMMEDFLRLA 347