Miyakogusa Predicted Gene

Lj0g3v0164299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164299.1 Non Characterized Hit- tr|K3YWL7|K3YWL7_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018663,42.4,2e-17,coiled-coil,NULL,CUFF.10267.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g064490.1 | transmembrane protein, putative | HC | chr1:28...   216   6e-57
Medtr1g064490.2 | transmembrane protein, putative | HC | chr1:28...   139   8e-34
Medtr1g064490.3 | transmembrane protein, putative | HC | chr1:28...   116   6e-27

>Medtr1g064490.1 | transmembrane protein, putative | HC |
           chr1:28370923-28368145 | 20130731
          Length = 129

 Score =  216 bits (549), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 118/129 (91%)

Query: 1   MVGVKRSSILLTLAFLMFMGIAVYFRLWAIDYNMSSDDTELIRRQFDLANREAMDESAEW 60
           M GVKR S L+ LAFLMFMGIAVYFRLWAIDYN+S DD+EL+RRQFD+ANREAMDESAEW
Sbjct: 1   MFGVKRKSTLVGLAFLMFMGIAVYFRLWAIDYNISIDDSELLRRQFDIANREAMDESAEW 60

Query: 61  RLKYDEEVNRANKCLKELRAFQESSKKAEDASGINHKLAILQKENAILLERVETLKREVE 120
           RLKYD+EV+R N+CLKEL+ FQ SS+ A+DASGINHK AILQKENAILLERVETLKR++E
Sbjct: 61  RLKYDKEVDRMNRCLKELQVFQNSSQIAKDASGINHKFAILQKENAILLERVETLKRQLE 120

Query: 121 DEKSKCNSR 129
           +EK KCNS+
Sbjct: 121 EEKLKCNSQ 129


>Medtr1g064490.2 | transmembrane protein, putative | HC |
          chr1:28370923-28368192 | 20130731
          Length = 95

 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%)

Query: 1  MVGVKRSSILLTLAFLMFMGIAVYFRLWAIDYNMSSDDTELIRRQFDLANREAMDESAEW 60
          M GVKR S L+ LAFLMFMGIAVYFRLWAIDYN+S DD+EL+RRQFD+ANREAMDESAEW
Sbjct: 1  MFGVKRKSTLVGLAFLMFMGIAVYFRLWAIDYNISIDDSELLRRQFDIANREAMDESAEW 60

Query: 61 RLKYDEEVNRANKCLKELRA 80
          RLKYD+EV+R N+CLKEL+ 
Sbjct: 61 RLKYDKEVDRMNRCLKELQV 80


>Medtr1g064490.3 | transmembrane protein, putative | HC |
          chr1:28370923-28368192 | 20130731
          Length = 87

 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 8/80 (10%)

Query: 1  MVGVKRSSILLTLAFLMFMGIAVYFRLWAIDYNMSSDDTELIRRQFDLANREAMDESAEW 60
          M GVKR S L+ LAFLMFMGIAVYFRLWAIDYN+S DD+EL+        REAMDESAEW
Sbjct: 1  MFGVKRKSTLVGLAFLMFMGIAVYFRLWAIDYNISIDDSELL--------REAMDESAEW 52

Query: 61 RLKYDEEVNRANKCLKELRA 80
          RLKYD+EV+R N+CLKEL+ 
Sbjct: 53 RLKYDKEVDRMNRCLKELQV 72