Miyakogusa Predicted Gene

Lj0g3v0164179.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164179.2 Non Characterized Hit- tr|J3L465|J3L465_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G4,41.67,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.10271.2
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0130.1 | structural constituent of cell wall protein, ...   132   2e-31
Medtr2g090360.2 | structural constituent of cell wall protein, p...   105   2e-23
Medtr2g090360.1 | structural constituent of cell wall protein, p...   105   2e-23
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063...    52   3e-07

>Medtr0004s0130.1 | structural constituent of cell wall protein,
           putative | HC | scaffold0004:37626-31693 | 20130731
          Length = 527

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 94/127 (74%), Gaps = 13/127 (10%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MKKY DNLMRFLEGISS+LSQLEL+ YNLD+SIGE++S+LN + G+Q SKLKSLEKH+QE
Sbjct: 82  MKKYADNLMRFLEGISSRLSQLELYCYNLDKSIGEIRSDLNRDHGDQDSKLKSLEKHVQE 141

Query: 61  IHSSEQVLR------------VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNASDA 107
           +H S Q+LR             K QLAQKESSS  HS SNED+ SPST   KK DNASD 
Sbjct: 142 VHRSVQILRDKQELAETQKELAKLQLAQKESSSSSHSQSNEDKSSPSTTDPKKADNASDT 201

Query: 108 PNRWISF 114
            N+ ++ 
Sbjct: 202 NNQQLAL 208


>Medtr2g090360.2 | structural constituent of cell wall protein,
           putative | LC | chr2:38466128-38468084 | 20130731
          Length = 480

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 80/117 (68%), Gaps = 13/117 (11%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MK   D+LMRFLEGISS+LSQLEL+ YN+D+SIGE+KSEL  +  E  SKLKSL+KHLQE
Sbjct: 60  MKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQE 119

Query: 61  IHSSEQVLR------------VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNA 104
           +H S Q+LR             K QLA+K S S  HS SNE+R SPS    K TDNA
Sbjct: 120 VHRSVQILRDKQELVETQKELAKLQLARKGSPSSSHSQSNEERFSPSAIDQKGTDNA 176


>Medtr2g090360.1 | structural constituent of cell wall protein,
           putative | LC | chr2:38464803-38468087 | 20130731
          Length = 500

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 80/117 (68%), Gaps = 13/117 (11%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MK   D+LMRFLEGISS+LSQLEL+ YN+D+SIGE+KSEL  +  E  SKLKSL+KHLQE
Sbjct: 80  MKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQE 139

Query: 61  IHSSEQVLR------------VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNA 104
           +H S Q+LR             K QLA+K S S  HS SNE+R SPS    K TDNA
Sbjct: 140 VHRSVQILRDKQELVETQKELAKLQLARKGSPSSSHSQSNEERFSPSAIDQKGTDNA 196


>Medtr6g004930.1 | DNA-binding protein, putative | HC |
           chr6:506365-512095 | 20130731
          Length = 565

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MKK++DNL   LEG+S++L+Q+E   ++L+ S+ ++K  +  N G    KL+ LE  L E
Sbjct: 134 MKKHMDNLHHVLEGVSARLTQVETRTHHLESSMDDLKVSVGNNHGITDGKLRLLENILSE 193

Query: 61  IHSSEQVLRVKPQLAQKE 78
           + +    ++ K  + Q +
Sbjct: 194 VQTGVHDIKDKQDIMQAQ 211