Miyakogusa Predicted Gene

Lj0g3v0163669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163669.1 CUFF.10288.1
         (233 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108160.1 | syntaxin of plants protein | HC | chr3:4998319...   298   3e-81
Medtr3g108160.2 | syntaxin of plants protein | HC | chr3:4998319...   228   3e-60
Medtr5g093600.1 | syntaxin of plants protein | HC | chr5:4087882...   178   5e-45
Medtr5g093600.2 | syntaxin of plants protein | HC | chr5:4087882...   177   6e-45

>Medtr3g108160.1 | syntaxin of plants protein | HC |
           chr3:49983199-49979202 | 20130731
          Length = 336

 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/233 (71%), Positives = 172/233 (73%), Gaps = 16/233 (6%)

Query: 1   MEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNXXXXXXXXXXXXXXXLKTRLMGAT 60
           MEIQELTSVIKQDITALNSAVVDLQL+SNSRNESGN               LKTRLM  T
Sbjct: 101 MEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTT 160

Query: 61  KEFKDVLTMRTENMKVHESRRQLFSASASKDSANPFVRQRPLXXXXXXXXXXXXXXXXXX 120
           KEFKDVLTMRTEN+KVHE+RRQLFSA+ASKDSANPF+RQRPL                  
Sbjct: 161 KEFKDVLTMRTENLKVHENRRQLFSANASKDSANPFIRQRPLATKSAASTSS-------- 212

Query: 121 XXQSSSQLFPKKQVDGESQPLLXXXXXXXXXXXXIVPLQDSYMQSRAEALQNVESTIHEL 180
               +      KQVDGESQPLL                QDSYMQSRAEALQNVESTIHEL
Sbjct: 213 --APAPPWASGKQVDGESQPLLQQQQQQVVPL------QDSYMQSRAEALQNVESTIHEL 264

Query: 181 SNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLM 233
           SNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLM
Sbjct: 265 SNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLM 317


>Medtr3g108160.2 | syntaxin of plants protein | HC |
           chr3:49983199-49979214 | 20130731
          Length = 301

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 139/201 (69%), Gaps = 16/201 (7%)

Query: 1   MEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNXXXXXXXXXXXXXXXLKTRLMGAT 60
           MEIQELTSVIKQDITALNSAVVDLQL+SNSRNESGN               LKTRLM  T
Sbjct: 101 MEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTT 160

Query: 61  KEFKDVLTMRTENMKVHESRRQLFSASASKDSANPFVRQRPLXXXXXXXXXXXXXXXXXX 120
           KEFKDVLTMRTEN+KVHE+RRQLFSA+ASKDSANPF+RQRPL                  
Sbjct: 161 KEFKDVLTMRTENLKVHENRRQLFSANASKDSANPFIRQRPL----------ATKSAAST 210

Query: 121 XXQSSSQLFPKKQVDGESQPLLXXXXXXXXXXXXIVPLQDSYMQSRAEALQNVESTIHEL 180
               +      KQVDGESQPLL                QDSYMQSRAEALQNVESTIHEL
Sbjct: 211 SSAPAPPWASGKQVDGESQPLLQQQQQQVVPL------QDSYMQSRAEALQNVESTIHEL 264

Query: 181 SNIFNQLATLVSQQGEVAIRI 201
           SNIFNQLATLVSQQGEVAIR 
Sbjct: 265 SNIFNQLATLVSQQGEVAIRF 285


>Medtr5g093600.1 | syntaxin of plants protein | HC |
           chr5:40878820-40872415 | 20130731
          Length = 334

 Score =  178 bits (451), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 133/236 (56%), Gaps = 8/236 (3%)

Query: 1   MEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNXXXXXXXXXXXXXXXLKTRLMGAT 60
           MEIQELT++IK DIT LNSAV+DLQ +        N               LK RLMGAT
Sbjct: 85  MEIQELTALIKTDITTLNSAVLDLQNIQKIDLADENYSEDRVVHSNAVCDDLKNRLMGAT 144

Query: 61  KEFKDVLTMRTENMKVHESRRQLFSASASKDSANPFVRQRPLXXXXXXXXXXXXXXXXXX 120
           K  +DVLT RTEN+K HE+R+Q+FS +  +    P     P                   
Sbjct: 145 KHLQDVLTTRTENIKAHENRKQIFSKNPLQHQPKPTTEPPPWSNSTNAFETESLQQTSGL 204

Query: 121 XXQ---SSSQLFPKKQVDGESQPLLXXXXXXXXXXXXIVPLQDSYMQSRAEALQNVESTI 177
                 + +QL  ++++  E+ P              +VP  + Y QSRA AL NVESTI
Sbjct: 205 PSNGIPAGNQL--RRRLAVENTP---SQQMEMSLVQQVVPRHEDYAQSRASALHNVESTI 259

Query: 178 HELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLM 233
            ELS IF  LAT+V+ QGE+AIRID+NMD++L NVEGA  +LL++LN ISSNRWLM
Sbjct: 260 TELSGIFTHLATMVAHQGELAIRIDDNMDESLTNVEGAHSSLLRHLNRISSNRWLM 315


>Medtr5g093600.2 | syntaxin of plants protein | HC |
           chr5:40878820-40872452 | 20130731
          Length = 268

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 133/236 (56%), Gaps = 8/236 (3%)

Query: 1   MEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNXXXXXXXXXXXXXXXLKTRLMGAT 60
           MEIQELT++IK DIT LNSAV+DLQ +        N               LK RLMGAT
Sbjct: 19  MEIQELTALIKTDITTLNSAVLDLQNIQKIDLADENYSEDRVVHSNAVCDDLKNRLMGAT 78

Query: 61  KEFKDVLTMRTENMKVHESRRQLFSASASKDSANPFVRQRPLXXXXXXXXXXXXXXXXXX 120
           K  +DVLT RTEN+K HE+R+Q+FS +  +    P     P                   
Sbjct: 79  KHLQDVLTTRTENIKAHENRKQIFSKNPLQHQPKPTTEPPPWSNSTNAFETESLQQTSGL 138

Query: 121 XXQ---SSSQLFPKKQVDGESQPLLXXXXXXXXXXXXIVPLQDSYMQSRAEALQNVESTI 177
                 + +QL  ++++  E+ P              +VP  + Y QSRA AL NVESTI
Sbjct: 139 PSNGIPAGNQL--RRRLAVENTP---SQQMEMSLVQQVVPRHEDYAQSRASALHNVESTI 193

Query: 178 HELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLM 233
            ELS IF  LAT+V+ QGE+AIRID+NMD++L NVEGA  +LL++LN ISSNRWLM
Sbjct: 194 TELSGIFTHLATMVAHQGELAIRIDDNMDESLTNVEGAHSSLLRHLNRISSNRWLM 249