Miyakogusa Predicted Gene

Lj0g3v0163489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163489.1 tr|A9SJ85|A9SJ85_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130836,42.86,8e-18,Sec63,Sec63 domain; no
description,NULL; SUBFAMILY NOT NAMED,NULL; HELICASE
SKI2W,NULL,CUFF.10191.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | ...   190   3e-49
Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa hel...    62   9e-11
Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa hel...    61   2e-10
Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa hel...    59   7e-10
Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa hel...    59   7e-10

>Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | HC |
            chr3:7719529-7688875 | 20130731
          Length = 2081

 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 101/115 (87%), Gaps = 4/115 (3%)

Query: 9    QDLQHFPRVKMKLRLQSRETDS----TLHIRLENINSRRHSSRAFVPRFPKIKEEQWWLI 64
            QDLQ+FP VKMKL+LQ R+T       LHIRLE +NSRRHSSRAFVPRFPKIKEEQWWL+
Sbjct: 1966 QDLQNFPHVKMKLKLQERDTGGERCYILHIRLEKLNSRRHSSRAFVPRFPKIKEEQWWLV 2025

Query: 65   LGNSCTSELYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSI 119
            LGN+ TSELYALKRVSFSDHL TSMKLP+T ANL+++K+ LVSDCYIGFEQEHSI
Sbjct: 2026 LGNTSTSELYALKRVSFSDHLVTSMKLPITPANLQDVKVTLVSDCYIGFEQEHSI 2080


>Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa
           helicase | HC | chr4:1682714-1679988 | 20130731
          Length = 890

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)

Query: 22  RLQSRETDSTLHIRLE-NINSRRHSSRAFVPRFPKIKEEQWWLILGNSCTSELYALKRVS 80
           R  +R  +  L++ LE +I+ +        PR+PK KEE WWL++G++ T+ L A+KRVS
Sbjct: 774 RFCNRFPNVDLYVTLERDIDGKTKIGPVDAPRYPKAKEEGWWLVVGDTKTNSLLAIKRVS 833

Query: 81  FSDHLNTSMKLPLT-SANLEEMKLILVSDCYIGFEQEHS 118
               L   ++      A  +   L  + D Y+G +QE+S
Sbjct: 834 LQRKLKAKLQFAAPDDAGKKSYILYFMCDSYMGCDQEYS 872


>Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa helicase
            | HC | chr2:29260637-29270804 | 20130731
          Length = 2188

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 14   FPRVKMKLRLQSRET-----DSTLHIRLE-NINSRRHSSRAFVPRFPKIKEEQWWLILGN 67
            FP + +   +   +      D TL + LE ++  +        PR+PK KEE WWL++G+
Sbjct: 2063 FPNIDLSYEILDNDNVRAGDDITLQVTLERDLEGKTEVGPVDAPRYPKAKEEGWWLVVGD 2122

Query: 68   SCTSELYALKRVSFSDHLNTSMKLPLTS-ANLEEMKLILVSDCYIGFEQEHS 118
            + T+ L A+KRVS    L   ++    + A  +   L  + D Y+G +QE+ 
Sbjct: 2123 TKTNMLLAIKRVSLQRKLKAKLEFAAPADAGKKSYVLYFMCDSYMGCDQEYG 2174


>Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa helicase
            | HC | chr4:2793467-2800740 | 20130731
          Length = 2072

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 50   VPRFPKIKEEQWWLILGNSCTSELYALKRVSFSDHLNTSMKLPL-TSANLEEMKLILVSD 108
             PR+PK KEE WWL++G++ T+ L A+KRVS    L   ++      A  +   L  + D
Sbjct: 1985 APRYPKAKEEGWWLVVGDTKTNSLLAIKRVSLQRKLKAKLQFAAPVDAGKKSYILFFMCD 2044

Query: 109  CYIGFEQEHS 118
             Y+G +QE+S
Sbjct: 2045 SYMGCDQEYS 2054


>Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa helicase
            | HC | chr4:2793467-2800896 | 20130731
          Length = 2099

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 50   VPRFPKIKEEQWWLILGNSCTSELYALKRVSFSDHLNTSMKLPL-TSANLEEMKLILVSD 108
             PR+PK KEE WWL++G++ T+ L A+KRVS    L   ++      A  +   L  + D
Sbjct: 2012 APRYPKAKEEGWWLVVGDTKTNSLLAIKRVSLQRKLKAKLQFAAPVDAGKKSYILFFMCD 2071

Query: 109  CYIGFEQEHS 118
             Y+G +QE+S
Sbjct: 2072 SYMGCDQEYS 2081