Miyakogusa Predicted Gene

Lj0g3v0162439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0162439.1 tr|I1MER5|I1MER5_SOYBN Ribosomal protein L34
OS=Glycine max PE=3 SV=1,64.17,5e-16,seg,NULL,CUFF.10298.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g015790.1 | ribosomal protein L34 | HC | chr2:4713276-4715...    50   4e-07

>Medtr2g015790.1 | ribosomal protein L34 | HC | chr2:4713276-4715194
           | 20130731
          Length = 144

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 69  DLISNAGTGNGKRRGLVVRAGKKFALCQTKRNRSRKSLARTHGFRRR 115
           DL  N G      R ++V AG++ ALC TKR+RSRKSLARTHGFR+R
Sbjct: 68  DLKPNVGPRRQNGRLVIVAAGRQ-ALCLTKRSRSRKSLARTHGFRKR 113