Miyakogusa Predicted Gene

Lj0g3v0161759.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0161759.4 tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein OS=Lotus
japonicus GN=YABBY1 PE=2 SV=1,97.13,0,SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; YABBY,YABBY protein,CUFF.10062.4
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101660.1 | plant-specific transcription factor YABBY fami...   343   5e-95
Medtr4g025900.1 | plant-specific transcription factor YABBY fami...   254   5e-68
Medtr2g087740.1 | plant-specific transcription factor YABBY fami...   172   2e-43
Medtr4g114730.1 | plant-specific transcription factor YABBY fami...   172   3e-43
Medtr4g050300.1 | plant-specific transcription factor YABBY fami...   162   3e-40
Medtr5g034030.1 | YABBY transcription factor | HC | chr5:1470182...   150   6e-37
Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-lik...   124   6e-29

>Medtr4g101660.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:42026521-42023461 | 20130731
          Length = 218

 Score =  343 bits (881), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 193/210 (91%), Gaps = 5/210 (2%)

Query: 13  DHQLPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ 72
           DH LPPSEQLCYVHC ICDTILAVSVP TSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ
Sbjct: 12  DH-LPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ 70

Query: 73  FHLGHSFFSPPH-NLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRP 131
           FHLGHSFFSP H NLL EMPNP+PNF+MNH NA ++FS    P R+ ADELPRPPIINRP
Sbjct: 71  FHLGHSFFSPTHHNLLEEMPNPAPNFMMNHINAPNDFSM--PPTRTVADELPRPPIINRP 128

Query: 132 PEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKK 191
           PEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKK
Sbjct: 129 PEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKK 188

Query: 192 TTVCQQEGEEVLMMKD-GFYASANVGVSPY 220
           T VCQQEG++ ++MKD GFYASAN+GVSPY
Sbjct: 189 TNVCQQEGDDQILMKDGGFYASANLGVSPY 218


>Medtr4g025900.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:8885604-8888552 | 20130731
          Length = 221

 Score =  254 bits (649), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 158/200 (79%), Gaps = 4/200 (2%)

Query: 22  LCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFS 81
           LCYVHCN CDT+LAVSVP TSLFKTVTVRCGHCTNLL VNMRALLLP+PNQ HLGH++F+
Sbjct: 25  LCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAPNQLHLGHTYFN 84

Query: 82  PPHNLLGEMPN-PSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQRVPS 140
           P   L+ E+ N PS N +MN     ++    ++      +E+P+PP  NRPPEKRQRVPS
Sbjct: 85  P-QTLMEEIRNAPSTNMMMNQLPNPNDLMMNTMRG-GHHEEIPKPPPANRPPEKRQRVPS 142

Query: 141 AYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEGE 200
           AYNRFIKDEIQRIK+ NPDI+HREAFSAAAKNWAHFPHIHFGLMPD    K    +Q+ E
Sbjct: 143 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSE 202

Query: 201 EVLMMKDGFYASANVGVSPY 220
           +VL MKDGF+  ANVGVSPY
Sbjct: 203 DVL-MKDGFFTQANVGVSPY 221


>Medtr2g087740.1 | plant-specific transcription factor YABBY family
           protein | HC | chr2:36921389-36915323 | 20130731
          Length = 195

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 124/197 (62%), Gaps = 11/197 (5%)

Query: 16  LPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPS--PNQF 73
           +  +E++CYVHCN C+T LAVSVP +SL   VTVRCGHC NLL VNM A  L S  P Q 
Sbjct: 8   MATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGATSLQSFTPQQD 67

Query: 74  HLGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPE 133
           H           L+      S   ++  ++++S+ S      +    E PR P I RPPE
Sbjct: 68  H------PQKQQLINCHQEASRKEVVGSSSSSSSSSSKCKAFQPLVHEQPRTPPI-RPPE 120

Query: 134 KRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTT 193
           KRQRVPSAYNRFIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGL  D + K+  
Sbjct: 121 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGS-KQAK 179

Query: 194 VCQQEGEEVLMMKDGFY 210
           +    G E     +GFY
Sbjct: 180 LDHGVG-EATQKSNGFY 195


>Medtr4g114730.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:47236664-47232867 | 20130731
          Length = 191

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 107/167 (64%), Gaps = 15/167 (8%)

Query: 19  SEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHS 78
           +EQLCY+ CN C+ +LAVSVP +SLF  VTVRCGHCTNL  VNM A       Q      
Sbjct: 13  AEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF-----QSLSWQD 67

Query: 79  FFSPPHNLLGEMPNPSPNFLMNHT-NATSNFSQFSVPARSAADELPRPPIINRPPEKRQR 137
             +P H +     NP      + T       +  S P     +E     ++NRPPEKRQR
Sbjct: 68  VQAPSHCM-----NPEYRIRTSSTPKCNDRIAMRSAPTTHVTEER----VVNRPPEKRQR 118

Query: 138 VPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLM 184
           VPSAYN+FIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 119 VPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 165


>Medtr4g050300.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:17796569-17804302 | 20130731
          Length = 179

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 114/196 (58%), Gaps = 22/196 (11%)

Query: 16  LPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHL 75
           +  +E++CYVHCN C+TILAV+VP +SL   VTVRCGHC NLL VNM A LL        
Sbjct: 5   MIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPP--P 62

Query: 76  GHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPR-PPIINRPPEK 134
                   H +  E  +       +  N  ++F          A E PR PPI  RP EK
Sbjct: 63  QLPQPQKQHIIDEEASSKEIGSSSSKCNKIASFE---------AVEHPRIPPI--RPIEK 111

Query: 135 RQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTV 194
           R RVPSAYNRFIK+EIQRIK+ NPDI+HREAFS+AAKNWAHFPHIHFG        K   
Sbjct: 112 RHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFG--------KQQA 163

Query: 195 CQQEGEEVLMMKDGFY 210
               GE      +GFY
Sbjct: 164 KLDHGEGTREKTNGFY 179


>Medtr5g034030.1 | YABBY transcription factor | HC |
           chr5:14701820-14703695 | 20130731
          Length = 217

 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 105/160 (65%), Gaps = 11/160 (6%)

Query: 20  EQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNM-RALLLPSPNQFHLGHS 78
           EQ+CYV C  C+TIL VSVP +SL   VTVRCGHCT+LL VNM +A  +P    FHL  S
Sbjct: 12  EQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASFVP----FHLLAS 67

Query: 79  FFSPPHNLLGEMPNPSPNFLMNHT-NATSNFSQFSVPARSAADELPRPPIINRPPEKRQR 137
                   L +  + SP+   N T N+ ++ S  +       D +P   ++N+PPEKRQR
Sbjct: 68  LTH-----LEQKESSSPDEDANKTLNSNTSASMMTYSDCEEDDVIPISNVVNKPPEKRQR 122

Query: 138 VPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFP 177
            PSAYNRFIK+EI+R+K+ NPD+ H+EAFS AAKNWA+ P
Sbjct: 123 TPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCP 162


>Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-like
           protein | HC | chr5:20267886-20271029 | 20130731
          Length = 216

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 97/163 (59%), Gaps = 21/163 (12%)

Query: 16  LPPSEQ-LCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFH 74
           +PPS+Q LCYV CN C+T+LAV +P   L  TVTV+CGHC+NL  +  R    PS     
Sbjct: 12  VPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRP---PSSKNQT 68

Query: 75  LGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPP-IINRPPE 133
           + H+      +L G            +++     S  S P  S     PRPP  + +PPE
Sbjct: 69  VDHTL-----SLQGI-----------YSSKKGQPSSSSSPTTSTESLSPRPPPFVVKPPE 112

Query: 134 KRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHF 176
           K+ R+PSAYNRF+K+EIQRIK  NP I HREAFSAAAKNWA +
Sbjct: 113 KKHRLPSAYNRFMKEEIQRIKVANPQIPHREAFSAAAKNWARY 155