Miyakogusa Predicted Gene

Lj0g3v0161759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0161759.1 tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein OS=Lotus
japonicus GN=YABBY1 PE=2 SV=1,97.61,0,SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; YABBY,YABBY protein,CUFF.10062.1
         (221 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101660.1 | plant-specific transcription factor YABBY fami...   340   7e-94
Medtr4g025900.1 | plant-specific transcription factor YABBY fami...   254   5e-68
Medtr2g087740.1 | plant-specific transcription factor YABBY fami...   168   3e-42
Medtr4g114730.1 | plant-specific transcription factor YABBY fami...   167   8e-42
Medtr4g050300.1 | plant-specific transcription factor YABBY fami...   157   7e-39
Medtr5g034030.1 | YABBY transcription factor | HC | chr5:1470182...   146   1e-35
Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-lik...   120   7e-28

>Medtr4g101660.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:42026521-42023461 | 20130731
          Length = 218

 Score =  340 bits (871), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 182/211 (86%), Positives = 192/211 (90%), Gaps = 6/211 (2%)

Query: 13  DHQLPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ 72
           DH LPPSEQLCYVHC ICDTILAVSVP TSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ
Sbjct: 12  DH-LPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ 70

Query: 73  FHLGHSFFSPPH-NLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRP 131
           FHLGHSFFSP H NLL EMPNP+PNF+MNH NA ++FS    P R+ ADELPRPPIINRP
Sbjct: 71  FHLGHSFFSPTHHNLLEEMPNPAPNFMMNHINAPNDFSM--PPTRTVADELPRPPIINRP 128

Query: 132 APEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMK 191
             EKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMK
Sbjct: 129 P-EKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMK 187

Query: 192 KTTVCQQEGEEVLMMKD-GFYASANVGVSPY 221
           KT VCQQEG++ ++MKD GFYASAN+GVSPY
Sbjct: 188 KTNVCQQEGDDQILMKDGGFYASANLGVSPY 218


>Medtr4g025900.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:8885604-8888552 | 20130731
          Length = 221

 Score =  254 bits (649), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 151/201 (75%), Gaps = 5/201 (2%)

Query: 22  LCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFS 81
           LCYVHCN CDT+LAVSVP TSLFKTVTVRCGHCTNLL VNMRALLLP+PNQ HLGH++F+
Sbjct: 25  LCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAPNQLHLGHTYFN 84

Query: 82  PPHNLLGEMPN-PSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPAPEKRQRVP 140
            P  L+ E+ N PS N +MN     ++    ++  R    E    P      PEKRQRVP
Sbjct: 85  -PQTLMEEIRNAPSTNMMMNQLPNPNDLMMNTM--RGGHHEEIPKPPPANRPPEKRQRVP 141

Query: 141 SAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEG 200
           SAYNRFIKDEIQRIK+ NPDI+HREAFSAAAKNWAHFPHIHFGLMPD    K    +Q+ 
Sbjct: 142 SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDS 201

Query: 201 EEVLMMKDGFYASANVGVSPY 221
           E+VL MKDGF+  ANVGVSPY
Sbjct: 202 EDVL-MKDGFFTQANVGVSPY 221


>Medtr2g087740.1 | plant-specific transcription factor YABBY family
           protein | HC | chr2:36921389-36915323 | 20130731
          Length = 195

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 124/198 (62%), Gaps = 12/198 (6%)

Query: 16  LPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPS--PNQF 73
           +  +E++CYVHCN C+T LAVSVP +SL   VTVRCGHC NLL VNM A  L S  P Q 
Sbjct: 8   MATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGATSLQSFTPQQD 67

Query: 74  HLGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPAP 133
           H           L+      S   ++  ++++S+ S      +    E PR P I RP P
Sbjct: 68  H------PQKQQLINCHQEASRKEVVGSSSSSSSSSSKCKAFQPLVHEQPRTPPI-RP-P 119

Query: 134 EKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKT 193
           EKRQRVPSAYNRFIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGL  D + K+ 
Sbjct: 120 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGS-KQA 178

Query: 194 TVCQQEGEEVLMMKDGFY 211
            +    G E     +GFY
Sbjct: 179 KLDHGVG-EATQKSNGFY 195


>Medtr4g114730.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:47236664-47232867 | 20130731
          Length = 191

 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 107/168 (63%), Gaps = 16/168 (9%)

Query: 19  SEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHS 78
           +EQLCY+ CN C+ +LAVSVP +SLF  VTVRCGHCTNL  VNM A       Q      
Sbjct: 13  AEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF-----QSLSWQD 67

Query: 79  FFSPPHNLLGEMPNPSPNFLMNHT-NATSNFSQFSVPARSAADELPRPPIINRPAPEKRQ 137
             +P H +     NP      + T       +  S P     +E     ++NRP PEKRQ
Sbjct: 68  VQAPSHCM-----NPEYRIRTSSTPKCNDRIAMRSAPTTHVTEER----VVNRP-PEKRQ 117

Query: 138 RVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLM 185
           RVPSAYN+FIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 118 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 165


>Medtr4g050300.1 | plant-specific transcription factor YABBY family
           protein | HC | chr4:17796569-17804302 | 20130731
          Length = 179

 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 114/197 (57%), Gaps = 23/197 (11%)

Query: 16  LPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHL 75
           +  +E++CYVHCN C+TILAV+VP +SL   VTVRCGHC NLL VNM A LL        
Sbjct: 5   MIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPP--P 62

Query: 76  GHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPR-PPIINRPAPE 134
                   H +  E  +       +  N  ++F          A E PR PPI  RP  E
Sbjct: 63  QLPQPQKQHIIDEEASSKEIGSSSSKCNKIASFE---------AVEHPRIPPI--RPI-E 110

Query: 135 KRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTT 194
           KR RVPSAYNRFIK+EIQRIK+ NPDI+HREAFS+AAKNWAHFPHIHFG        K  
Sbjct: 111 KRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFG--------KQQ 162

Query: 195 VCQQEGEEVLMMKDGFY 211
                GE      +GFY
Sbjct: 163 AKLDHGEGTREKTNGFY 179


>Medtr5g034030.1 | YABBY transcription factor | HC |
           chr5:14701820-14703695 | 20130731
          Length = 217

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 105/161 (65%), Gaps = 12/161 (7%)

Query: 20  EQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNM-RALLLPSPNQFHLGHS 78
           EQ+CYV C  C+TIL VSVP +SL   VTVRCGHCT+LL VNM +A  +P    FHL  S
Sbjct: 12  EQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASFVP----FHLLAS 67

Query: 79  FFSPPHNLLGEMPNPSPNFLMNHT-NATSNFSQFSVPARSAADELPRPPIINRPAPEKRQ 137
                   L +  + SP+   N T N+ ++ S  +       D +P   ++N+P PEKRQ
Sbjct: 68  LTH-----LEQKESSSPDEDANKTLNSNTSASMMTYSDCEEDDVIPISNVVNKP-PEKRQ 121

Query: 138 RVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFP 178
           R PSAYNRFIK+EI+R+K+ NPD+ H+EAFS AAKNWA+ P
Sbjct: 122 RTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCP 162


>Medtr5g046230.1 | YABBY-like transcription factor CRABS CLAW-like
           protein | HC | chr5:20267886-20271029 | 20130731
          Length = 216

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 94/163 (57%), Gaps = 20/163 (12%)

Query: 16  LPPSEQ-LCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFH 74
           +PPS+Q LCYV CN C+T+LAV +P   L  TVTV+CGHC+NL  +  R    PS     
Sbjct: 12  VPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRP---PSSKNQT 68

Query: 75  LGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPAPE 134
           + H+      +L G            +++     S  S P  S     PRPP      PE
Sbjct: 69  VDHTL-----SLQGI-----------YSSKKGQPSSSSSPTTSTESLSPRPPPFVVKPPE 112

Query: 135 KRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHF 177
           K+ R+PSAYNRF+K+EIQRIK  NP I HREAFSAAAKNWA +
Sbjct: 113 KKHRLPSAYNRFMKEEIQRIKVANPQIPHREAFSAAAKNWARY 155