Miyakogusa Predicted Gene

Lj0g3v0161589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0161589.1 Non Characterized Hit- tr|I3ST46|I3ST46_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,84.21,9e-17,seg,NULL; SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT
SEC11,Peptidase S26B, eukaryotic signal peptida,CUFF.10032.1
         (61 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g103570.1 | microsomal signal peptidase subunit | HC | chr...    63   6e-11

>Medtr2g103570.1 | microsomal signal peptidase subunit | HC |
          chr2:44601268-44597771 | 20130731
          Length = 180

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 1  MNSVKSLQ---VLSQGVTLGMIVTSALIIWKALMCITGXXXXXXXXXXXXXXPGFKR 54
          ++S+KSLQ   VL+Q V+LGMIVTSALIIWKALMCITG              PGFKR
Sbjct: 8  VDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKR 64