Miyakogusa Predicted Gene

Lj0g3v0160829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0160829.1 Non Characterized Hit- tr|D7KQA7|D7KQA7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.89,4e-19,SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN,SSXT;
SSXT,SSXT; seg,NULL,gene.Ljchr0_pseudomol_20120828.path1.gene16206.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080590.1 | GRF1-interacting factor-like protein | HC | ch...   135   2e-32
Medtr7g115410.1 | SSXT protein (amine-terminal region) protein |...   111   2e-25
Medtr8g024650.3 | GRF1-interacting factor-like protein | HC | ch...    92   1e-19
Medtr8g024650.1 | GRF1-interacting factor-like protein | HC | ch...    92   1e-19
Medtr8g024650.2 | GRF1-interacting factor-like protein | HC | ch...    92   1e-19
Medtr3g092260.1 | SSXT protein (amine-terminal region) protein |...    57   5e-09
Medtr3g097190.1 | hypothetical protein | LC | chr3:44550859-4454...    54   4e-08

>Medtr1g080590.1 | GRF1-interacting factor-like protein | HC |
          chr1:35838257-35836013 | 20130731
          Length = 211

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 69/71 (97%), Gaps = 1/71 (1%)

Query: 13 ASYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
          A+YY NN VT+DHIQQYLDENKSLILKIVESQN+GKL+ECAENQSRLQRNLMYLAAIADS
Sbjct: 13 AAYYPNN-VTTDHIQQYLDENKSLILKIVESQNTGKLTECAENQSRLQRNLMYLAAIADS 71

Query: 73 QPQPPTMPGQW 83
          QPQPPTMPGQ+
Sbjct: 72 QPQPPTMPGQY 82


>Medtr7g115410.1 | SSXT protein (amine-terminal region) protein |
          HC | chr7:47687065-47688259 | 20130731
          Length = 218

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/56 (94%), Positives = 55/56 (98%)

Query: 27 QQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQPQPPTMPGQ 82
          +QYLDENKSLILKIVESQNSGKLSECAENQ+RLQRNLMYLAAIADSQPQPPTM GQ
Sbjct: 16 KQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPTMAGQ 71


>Medtr8g024650.3 | GRF1-interacting factor-like protein | HC |
          chr8:9109643-9113372 | 20130731
          Length = 213

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 14 SYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
          S+    N+T++ IQ+YLDENK LIL I+++QN GKL+ECA+ Q++LQ+NLMYLAAIAD+Q
Sbjct: 13 SFPQQTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQ 72

Query: 74 PQPPTMPGQW 83
          PQ P +P Q 
Sbjct: 73 PQTPALPPQM 82


>Medtr8g024650.1 | GRF1-interacting factor-like protein | HC |
          chr8:9109643-9113372 | 20130731
          Length = 213

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 14 SYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
          S+    N+T++ IQ+YLDENK LIL I+++QN GKL+ECA+ Q++LQ+NLMYLAAIAD+Q
Sbjct: 13 SFPQQTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQ 72

Query: 74 PQPPTMPGQW 83
          PQ P +P Q 
Sbjct: 73 PQTPALPPQM 82


>Medtr8g024650.2 | GRF1-interacting factor-like protein | HC |
          chr8:9109643-9113372 | 20130731
          Length = 213

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 14 SYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
          S+    N+T++ IQ+YLDENK LIL I+++QN GKL+ECA+ Q++LQ+NLMYLAAIAD+Q
Sbjct: 13 SFPQQTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQ 72

Query: 74 PQPPTMPGQW 83
          PQ P +P Q 
Sbjct: 73 PQTPALPPQM 82


>Medtr3g092260.1 | SSXT protein (amine-terminal region) protein |
          HC | chr3:42152282-42149249 | 20130731
          Length = 189

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 21 VTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQPQ 75
          +T++ IQ+ L+EN+ LI+KI+E Q  GK SE    Q++LQ NL +LA +AD  PQ
Sbjct: 11 LTTEQIQKCLEENEELIMKILEGQKQGKHSELGPYQAKLQHNLTFLAKLADFGPQ 65


>Medtr3g097190.1 | hypothetical protein | LC |
           chr3:44550859-44549778 | 20130731
          Length = 182

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 30/38 (78%)

Query: 46  SGKLSECAENQSRLQRNLMYLAAIADSQPQPPTMPGQW 83
           S ++ E AENQS L RNLM LAAIADSQPQPPT  GQ+
Sbjct: 76  STEMIEAAENQSSLLRNLMCLAAIADSQPQPPTTTGQY 113