Miyakogusa Predicted Gene

Lj0g3v0159929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159929.1 tr|A9SFM5|A9SFM5_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,40.68,0.000000000000009, ,CUFF.9919.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g105350.2 | embryo defective 2735 protein | HC | chr7:4271...   189   6e-49
Medtr7g105350.1 | embryo defective 2735 protein | HC | chr7:4271...   189   6e-49

>Medtr7g105350.2 | embryo defective 2735 protein | HC |
           chr7:42711395-42716130 | 20130731
          Length = 167

 Score =  189 bits (480), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 1   MKLRVVCRKLYDYVRYDLKEIAFPSSLPDPPDMKKRLKLSWEERIWVLKRAARLYAASWV 60
           +K+RVVCRKLYDYV YDLKEIAFPSSLPDPP++KKR KL+WE+RIWVLK+A RLYAASWV
Sbjct: 5   LKVRVVCRKLYDYVCYDLKEIAFPSSLPDPPNIKKRPKLTWEQRIWVLKKATRLYAASWV 64

Query: 61  RDIGPDLRPDDYKNDDMTDEPNGDKETTKGKEPSTLEDLAVAARGGMETLRPAL 114
           RDIGPDLRP+DYK D+M DE N  K+T K KE S +E+LA+AARGGMETLRPAL
Sbjct: 65  RDIGPDLRPNDYKTDEMNDESNAQKKTAKDKELSIVEELAIAARGGMETLRPAL 118


>Medtr7g105350.1 | embryo defective 2735 protein | HC |
           chr7:42711395-42716130 | 20130731
          Length = 167

 Score =  189 bits (480), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 1   MKLRVVCRKLYDYVRYDLKEIAFPSSLPDPPDMKKRLKLSWEERIWVLKRAARLYAASWV 60
           +K+RVVCRKLYDYV YDLKEIAFPSSLPDPP++KKR KL+WE+RIWVLK+A RLYAASWV
Sbjct: 5   LKVRVVCRKLYDYVCYDLKEIAFPSSLPDPPNIKKRPKLTWEQRIWVLKKATRLYAASWV 64

Query: 61  RDIGPDLRPDDYKNDDMTDEPNGDKETTKGKEPSTLEDLAVAARGGMETLRPAL 114
           RDIGPDLRP+DYK D+M DE N  K+T K KE S +E+LA+AARGGMETLRPAL
Sbjct: 65  RDIGPDLRPNDYKTDEMNDESNAQKKTAKDKELSIVEELAIAARGGMETLRPAL 118