Miyakogusa Predicted Gene

Lj0g3v0159779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159779.1 Non Characterized Hit- tr|H0YQI0|H0YQI0_TAEGU
Uncharacterized protein (Fragment) OS=Taeniopygia
gutt,39.39,4e-16,seg,NULL; DUF1992,DnaJ homologue, subfamily C, member
28, conserved domain,CUFF.9908.1
         (222 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g062250.1 | nucleobase:cation symporter, putative | HC | c...   309   1e-84

>Medtr1g062250.1 | nucleobase:cation symporter, putative | HC |
           chr1:27078838-27080454 | 20130731
          Length = 213

 Score =  309 bits (791), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 171/221 (77%), Gaps = 8/221 (3%)

Query: 1   MATCLRLGRCATSNSLSFFRSQGXXXXXXXXXXXXXXXXXXXXXXXXXGKGKKKLVDRLS 60
           M+  LRL RCA+ NSL F  S                              KKKL DRLS
Sbjct: 1   MSMYLRLSRCASLNSL-FHNS-------LLSTTVRCCSSSSPSPSGKSKPDKKKLGDRLS 52

Query: 61  AVIDAVHDRNLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFENLPGKGKPLKLDTN 120
           AVIDA +DR LPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFENLPGKGKPLKLDTN
Sbjct: 53  AVIDAANDRKLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFENLPGKGKPLKLDTN 112

Query: 121 PHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISEWRMSLKKAWTSKCSGDHSKWVESS 180
           PHADPAEDTLYRILSKNGCAPEWVELNKEIR RISEWR SLKKA  +KCS D S WV SS
Sbjct: 113 PHADPAEDTLYRILSKNGCAPEWVELNKEIRFRISEWRKSLKKASANKCSEDQSMWVGSS 172

Query: 181 EALKSQLREINNKVFRYNLIVPFGRQMFGLKWEKELGYLEE 221
           +ALKSQL+EIN+KVFRYNLIVPFGRQM GLKWEKELG L+E
Sbjct: 173 QALKSQLKEINDKVFRYNLIVPFGRQMNGLKWEKELGNLDE 213