Miyakogusa Predicted Gene

Lj0g3v0159729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159729.1 tr|B9HRR7|B9HRR7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_804223 PE=4
SV=1,82.86,0.00000001,DUF677,Protein of unknown function
DUF677,CUFF.9903.1
         (35 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g034480.1 | UPF0496 plant-like protein | HC | chr1:1255989...    60   5e-10
Medtr4g069160.1 | UPF0496 plant-like protein | HC | chr4:2599836...    56   7e-09

>Medtr1g034480.1 | UPF0496 plant-like protein | HC |
           chr1:12559898-12557369 | 20130731
          Length = 371

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/34 (82%), Positives = 30/34 (88%)

Query: 1   MKNVEDLGVQAGTCSRDIRRAKTVVLQKILKLPQ 34
           MKNVEDLG QA TCSRDI RA+TVVLQKI+KLP 
Sbjct: 337 MKNVEDLGAQADTCSRDIIRARTVVLQKIVKLPH 370


>Medtr4g069160.1 | UPF0496 plant-like protein | HC |
           chr4:25998369-25996486 | 20130731
          Length = 374

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 1   MKNVEDLGVQAGTCSRDIRRAKTVVLQKILKLP 33
           MKNVEDLGVQA  CSRDIRRA+TVVLQ+I+K P
Sbjct: 340 MKNVEDLGVQADNCSRDIRRARTVVLQRIIKHP 372