Miyakogusa Predicted Gene

Lj0g3v0159479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159479.1 tr|G0Y6U9|G0Y6U9_ARAHY RNA-directed DNA
polymerase OS=Arachis hypogaea GN=303L13_19 PE=4
SV=1,41.79,0.00000002, ,CUFF.9883.1
         (70 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g122570.1 | DUF4283 domain protein | HC | chr4:50550588-50...    54   4e-08
Medtr0036s0160.1 | hypothetical protein | LC | scaffold0036:6763...    50   5e-07

>Medtr4g122570.1 | DUF4283 domain protein | HC |
           chr4:50550588-50548256 | 20130731
          Length = 530

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 12  RANRLFQFEAHWMDHPLYPEVVRRAWQQGELDVARALEEVRVDSLEFNKNFFGNIF 67
           R  R F F+A W+ H  +  VV+ AW +   D+   L+EVR ++L FN   FGNIF
Sbjct: 407 RQARPFCFQAAWLTHEDFDNVVKTAWDRNHADITTGLDEVRKEALVFNDEVFGNIF 462


>Medtr0036s0160.1 | hypothetical protein | LC |
          scaffold0036:67634-68332 | 20130731
          Length = 232

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 1  MLIRCGRKQGARANRLFQFEAHWMDHPLYPEVVRRAWQQGELDVARALEEVRVDSLEFNK 60
          +L+R G    AR  R F F+A W+D   Y E+V+ +W     ++  +L +V+ +S+ FN 
Sbjct: 34 LLLRFGGLPLARGPRSFCFKAAWIDQHDYAELVKNSWHFP--NITASLNKVKENSITFNH 91

Query: 61 NFFGNIFH 68
            FGNIF 
Sbjct: 92 EVFGNIFQ 99