Miyakogusa Predicted Gene

Lj0g3v0158549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158549.1 tr|I0AVQ1|I0AVQ1_9ROSI WRKY13 transcription
factor OS=Vitis amurensis PE=2
SV=1,48.15,2e-17,seg,NULL,NODE_78304_length_509_cov_10.119843.path1.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095080.3 | WRKY family transcription factor | HC | chr3:4...    63   9e-11
Medtr3g095080.1 | WRKY family transcription factor | HC | chr3:4...    63   1e-10
Medtr8g092140.1 | WRKY family transcription factor | HC | chr8:3...    55   2e-08

>Medtr3g095080.3 | WRKY family transcription factor | HC |
           chr3:43414486-43415577 | 20130731
          Length = 193

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 5   SQTIVNHSVFEEQDQIHP---QMGF-IPFPANMAFPP-----YQSLKTLNEIAPXXXXXX 55
           +  IVNH    +Q+Q H    QMGF IPFP NM  PP     +QSLK ++ I P      
Sbjct: 3   TTNIVNHHSLFDQEQDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPE 62

Query: 56  XXXXXXXXXXXXXXVQKPRE-DLIXXXXXXXXXXXXXXXRSRVDSWAWREVSDCLIMGKR 114
                         VQK RE D                 RS+V+SWAW EV+  LI GKR
Sbjct: 63  AANFAETLLATA--VQKTREFDDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTGSLI-GKR 119

Query: 115 NGGGDPX----XXXXLGVSSM 131
           + GGD          LGVS++
Sbjct: 120 SSGGDDQHHHHHNQQLGVSAI 140


>Medtr3g095080.1 | WRKY family transcription factor | HC |
           chr3:43414482-43417137 | 20130731
          Length = 244

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 5   SQTIVNHSVFEEQDQIHP---QMGF-IPFPANMAFPP-----YQSLKTLNEIAPXXXXXX 55
           +  IVNH    +Q+Q H    QMGF IPFP NM  PP     +QSLK ++ I P      
Sbjct: 3   TTNIVNHHSLFDQEQDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPE 62

Query: 56  XXXXXXXXXXXXXXVQKPRE-DLIXXXXXXXXXXXXXXXRSRVDSWAWREVSDCLIMGKR 114
                         VQK RE D                 RS+V+SWAW EV+  LI GKR
Sbjct: 63  AANFAETLLATA--VQKTREFDDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTGSLI-GKR 119

Query: 115 NGGGDPX----XXXXLGVSSM 131
           + GGD          LGVS++
Sbjct: 120 SSGGDDQHHHHHNQQLGVSAI 140


>Medtr8g092140.1 | WRKY family transcription factor | HC |
           chr8:38496916-38494755 | 20130731
          Length = 234

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 8   IVNHSVFEEQDQIHPQMGFIPFPANMAFPPY---QSLKTLNEIAPXXXXXXXXXXXXXXX 64
           I++H +FEE++QI  QMGFIPFP N+ FP     QSLK  + IA                
Sbjct: 4   IIDHHLFEEENQISTQMGFIPFPTNLTFPSLDCNQSLKAFSSIASSLTSESDSTSNLTQT 63

Query: 65  XXXXXVQKPREDLIXXXXXXXXXXXXXXXRSRVDSWA---WREVSDCL-IMGKRNG 116
                 QK +E L                 S V+ WA      +S+C+   GKRNG
Sbjct: 64  LLTTNPQKSKEYLTSSFGGSTPFLSLHG--SIVNPWAILGGEVISNCMNNSGKRNG 117