Miyakogusa Predicted Gene

Lj0g3v0158389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158389.1 Non Characterized Hit- tr|B9RJV9|B9RJV9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.56,3e-17,seg,NULL,21380_g.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100480.2 | ubiquitin carboxy-terminal hydrolase | HC | ch...   176   2e-44
Medtr3g100480.1 | ubiquitin carboxy-terminal hydrolase | HC | ch...   175   2e-44
Medtr5g066000.1 | ubiquitin carboxy-terminal hydrolase | HC | ch...    73   2e-13

>Medtr3g100480.2 | ubiquitin carboxy-terminal hydrolase | HC |
            chr3:46217863-46210835 | 20130731
          Length = 1146

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 123/198 (62%), Gaps = 12/198 (6%)

Query: 1    MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
            +SSS+SPDGSP LESFYS+FH LK IL+E                  CST+S RDSTS+D
Sbjct: 960  ISSSVSPDGSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMD 1019

Query: 61   DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
            DFSDYIFGDSGRGWSS WRN           PLN R SPLSDMD+YDSVSP AT  RIPT
Sbjct: 1020 DFSDYIFGDSGRGWSSTWRN-SDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPT 1078

Query: 121  GSSSEIDGPSHRSREMDVERKGVGDSSL-HRKLDSGRVXXXXXXXXXRETDSFLKLRTDH 179
            GSS++ D         DV      D+ L HRKLDS            ++ DSFLKL ++H
Sbjct: 1079 GSSAKTD-------RDDVISHLHSDTILQHRKLDS---SSISSNSSSKDADSFLKLGSNH 1128

Query: 180  FNDVNTNLSCRKSRKRTD 197
             ND N+ +S RKSRKRT+
Sbjct: 1129 SNDKNSVVSSRKSRKRTE 1146


>Medtr3g100480.1 | ubiquitin carboxy-terminal hydrolase | HC |
            chr3:46217863-46210835 | 20130731
          Length = 1116

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 123/198 (62%), Gaps = 12/198 (6%)

Query: 1    MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
            +SSS+SPDGSP LESFYS+FH LK IL+E                  CST+S RDSTS+D
Sbjct: 930  ISSSVSPDGSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMD 989

Query: 61   DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
            DFSDYIFGDSGRGWSS WRN           PLN R SPLSDMD+YDSVSP AT  RIPT
Sbjct: 990  DFSDYIFGDSGRGWSSTWRN-SDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPT 1048

Query: 121  GSSSEIDGPSHRSREMDVERKGVGDSSL-HRKLDSGRVXXXXXXXXXRETDSFLKLRTDH 179
            GSS++ D         DV      D+ L HRKLDS            ++ DSFLKL ++H
Sbjct: 1049 GSSAKTD-------RDDVISHLHSDTILQHRKLDS---SSISSNSSSKDADSFLKLGSNH 1098

Query: 180  FNDVNTNLSCRKSRKRTD 197
             ND N+ +S RKSRKRT+
Sbjct: 1099 SNDKNSVVSSRKSRKRTE 1116


>Medtr5g066000.1 | ubiquitin carboxy-terminal hydrolase | HC |
            chr5:27799038-27807063 | 20130731
          Length = 1048

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)

Query: 1    MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
            MS+SIS  G P LE+ +SKFH +K I++E                  CST+S  DST  D
Sbjct: 890  MSNSISSCGLPTLETIHSKFHHMKSIMEEDSSSDNSSLISNNSDECSCSTDSTCDSTGTD 949

Query: 61   DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
            +F+DYIFG+S RG                                 DS           T
Sbjct: 950  EFADYIFGNSVRGGGG------------------------------DSC----------T 969

Query: 121  GSSSEIDGPSHRSREMDVERKGVGDSSL-------HRKLDSGRVXXXXXXXXXRETDSFL 173
             S  +ID   +R R ++VER   G S L       HRKLD+ R           E     
Sbjct: 970  SSRVDIDSHLYRRRPVNVERSEGGVSHLHHNTSIEHRKLDTCRSSSSFRESDSFE----- 1024

Query: 174  KLRTDHFNDVNTNLSCRKSRKRTD 197
            +  ++HF+ +N+ +S RK+R+R D
Sbjct: 1025 RAGSNHFSHINSGVSYRKTRERKD 1048