Miyakogusa Predicted Gene
- Lj0g3v0158389.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0158389.1 Non Characterized Hit- tr|B9RJV9|B9RJV9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.56,3e-17,seg,NULL,21380_g.1
(197 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g100480.2 | ubiquitin carboxy-terminal hydrolase | HC | ch... 176 2e-44
Medtr3g100480.1 | ubiquitin carboxy-terminal hydrolase | HC | ch... 175 2e-44
Medtr5g066000.1 | ubiquitin carboxy-terminal hydrolase | HC | ch... 73 2e-13
>Medtr3g100480.2 | ubiquitin carboxy-terminal hydrolase | HC |
chr3:46217863-46210835 | 20130731
Length = 1146
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 123/198 (62%), Gaps = 12/198 (6%)
Query: 1 MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
+SSS+SPDGSP LESFYS+FH LK IL+E CST+S RDSTS+D
Sbjct: 960 ISSSVSPDGSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMD 1019
Query: 61 DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
DFSDYIFGDSGRGWSS WRN PLN R SPLSDMD+YDSVSP AT RIPT
Sbjct: 1020 DFSDYIFGDSGRGWSSTWRN-SDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPT 1078
Query: 121 GSSSEIDGPSHRSREMDVERKGVGDSSL-HRKLDSGRVXXXXXXXXXRETDSFLKLRTDH 179
GSS++ D DV D+ L HRKLDS ++ DSFLKL ++H
Sbjct: 1079 GSSAKTD-------RDDVISHLHSDTILQHRKLDS---SSISSNSSSKDADSFLKLGSNH 1128
Query: 180 FNDVNTNLSCRKSRKRTD 197
ND N+ +S RKSRKRT+
Sbjct: 1129 SNDKNSVVSSRKSRKRTE 1146
>Medtr3g100480.1 | ubiquitin carboxy-terminal hydrolase | HC |
chr3:46217863-46210835 | 20130731
Length = 1116
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 123/198 (62%), Gaps = 12/198 (6%)
Query: 1 MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
+SSS+SPDGSP LESFYS+FH LK IL+E CST+S RDSTS+D
Sbjct: 930 ISSSVSPDGSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMD 989
Query: 61 DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
DFSDYIFGDSGRGWSS WRN PLN R SPLSDMD+YDSVSP AT RIPT
Sbjct: 990 DFSDYIFGDSGRGWSSTWRN-SDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPT 1048
Query: 121 GSSSEIDGPSHRSREMDVERKGVGDSSL-HRKLDSGRVXXXXXXXXXRETDSFLKLRTDH 179
GSS++ D DV D+ L HRKLDS ++ DSFLKL ++H
Sbjct: 1049 GSSAKTD-------RDDVISHLHSDTILQHRKLDS---SSISSNSSSKDADSFLKLGSNH 1098
Query: 180 FNDVNTNLSCRKSRKRTD 197
ND N+ +S RKSRKRT+
Sbjct: 1099 SNDKNSVVSSRKSRKRTE 1116
>Medtr5g066000.1 | ubiquitin carboxy-terminal hydrolase | HC |
chr5:27799038-27807063 | 20130731
Length = 1048
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 52/204 (25%)
Query: 1 MSSSISPDGSPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
MS+SIS G P LE+ +SKFH +K I++E CST+S DST D
Sbjct: 890 MSNSISSCGLPTLETIHSKFHHMKSIMEEDSSSDNSSLISNNSDECSCSTDSTCDSTGTD 949
Query: 61 DFSDYIFGDSGRGWSSLWRNXXXXXXXXXXXPLNFRHSPLSDMDRYDSVSPVATGLRIPT 120
+F+DYIFG+S RG DS T
Sbjct: 950 EFADYIFGNSVRGGGG------------------------------DSC----------T 969
Query: 121 GSSSEIDGPSHRSREMDVERKGVGDSSL-------HRKLDSGRVXXXXXXXXXRETDSFL 173
S +ID +R R ++VER G S L HRKLD+ R E
Sbjct: 970 SSRVDIDSHLYRRRPVNVERSEGGVSHLHHNTSIEHRKLDTCRSSSSFRESDSFE----- 1024
Query: 174 KLRTDHFNDVNTNLSCRKSRKRTD 197
+ ++HF+ +N+ +S RK+R+R D
Sbjct: 1025 RAGSNHFSHINSGVSYRKTRERKD 1048