Miyakogusa Predicted Gene

Lj0g3v0158259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158259.1 CUFF.9786.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC ...   169   1e-42
Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC ...   144   3e-35
Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC ...   123   9e-29
Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC ...   102   2e-22
Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC ...    94   5e-20

>Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49624495 | 20130731
          Length = 170

 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 100/176 (56%), Gaps = 15/176 (8%)

Query: 1   MSRPGDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSRPGDWNCRTC+HLNFQRRESCQRCGE                                
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGE--------SRMTSGCGAVDFGGSFLGGRGSSS 52

Query: 61  XXXXXXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXX-- 118
                  PDVRPGDWYC VGNCGAHNFASRS CFKCGAPK+                   
Sbjct: 53  PFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPY 112

Query: 119 -----XXXXXXXARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSNGGRSPY 169
                        RPGWKSGDWIC+RSGCNEHNFANRMECYRC+ PRDS+ GRS Y
Sbjct: 113 GFGAGSAGGGASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRDSSTGRSSY 168


>Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:2646573-2643799 | 20130731
          Length = 147

 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 89/162 (54%), Gaps = 16/162 (9%)

Query: 1   MSRPGDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSRPGDWNCR+C H+NFQRRESCQRCG+                                
Sbjct: 1   MSRPGDWNCRSCQHMNFQRRESCQRCGDSKYGERVDYGSVFGGIRGGSSFGLSG------ 54

Query: 61  XXXXXXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXX 120
                   DVR GDWYC  GNCGAHNFASR  CFKCGA K+                   
Sbjct: 55  -------SDVRLGDWYCGAGNCGAHNFASRLSCFKCGAFKDDLAGGGYNNSDILLSRGFG 107

Query: 121 XXXXXARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDS 162
                 RPGWKSGDWIC+R GCNEHNFA+RMEC++CSAPRD+
Sbjct: 108 GS---TRPGWKSGDWICNRLGCNEHNFASRMECFKCSAPRDT 146


>Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC |
           chr3:49625913-49625045 | 20130731
          Length = 175

 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 1   MSRPGDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSRPGDWNCRTC+HLNFQRRESCQRCGE                                
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGE--------SRMTSGCGAVDFGGSFLGGRGSSS 52

Query: 61  XXXXXXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXX-- 118
                  PDVRPGDWYC VGNCGAHNFASRS CFKCGAPK+                   
Sbjct: 53  PFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPY 112

Query: 119 -----XXXXXXXARPGWKSGDWICSRSGCNEHNFANRMECYRCS 157
                        RPGWKSGDWIC+R   N H F   ++    S
Sbjct: 113 GFGAGSAGGGASTRPGWKSGDWICTRFHVN-HFFHYTLQFLLIS 155



 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 71  RPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXX--XXXXXXXXXXXXXXXXXXXXXARP 128
           RPGDW C    C   NF  R  C +CG  +                             P
Sbjct: 3   RPGDWNCRT--CNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 129 GWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSN 163
             + GDW C+   C  HNFA+R  C++C AP+D +
Sbjct: 61  DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDID 95


>Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC |
           chr4:46857090-46858933 | 20130731
          Length = 140

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 73/160 (45%), Gaps = 27/160 (16%)

Query: 5   GDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 64
           GDW C  C H+NF++RE+CQ CG P                                   
Sbjct: 6   GDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRT-------------------- 45

Query: 65  XXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXXXXXX 124
               +   GDW+C   NCGAHN+ASRS C++CGA K+                       
Sbjct: 46  ----ETLAGDWFCTSMNCGAHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYGSDCS-- 99

Query: 125 XARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSNG 164
            + PGWKSGDWIC R GC  HN+A+R ECY+C  PRD  G
Sbjct: 100 -SPPGWKSGDWICPRIGCGIHNYASRTECYKCKMPRDYGG 138


>Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC |
           chr2:23383920-23382437 | 20130731
          Length = 128

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 39/160 (24%)

Query: 5   GDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 64
           GDW C  C H+NF++R++CQ CG P                                   
Sbjct: 6   GDWMCNACQHINFKKRDACQNCGYPKIGGPDPETYRYNW--------------------- 44

Query: 65  XXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXXXXXX 124
               +   GDWYC+  NCGAHN+ASR+ C++CGA K                        
Sbjct: 45  ---TETLAGDWYCSGMNCGAHNYASRTSCYRCGALKNDNSYGSDCNYP------------ 89

Query: 125 XARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSNG 164
              PGWK+GDWIC+R GC  HN+A+R EC++C  P+   G
Sbjct: 90  ---PGWKTGDWICTRYGCGVHNYASRGECFKCKTPKSFGG 126