Miyakogusa Predicted Gene
- Lj0g3v0157999.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0157999.1 Non Characterized Hit- tr|K4AMF8|K4AMF8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si040099,40.23,7e-18,coiled-coil,NULL; HLH,Helix-loop-helix domain;
no description,Helix-loop-helix domain; helix loop he,CUFF.9769.1
(257 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g048720.1 | transcription factor ORG2-like protein | HC | ... 199 2e-51
Medtr7g090410.1 | transcription factor, putative | HC | chr7:355... 199 2e-51
Medtr1g048720.2 | transcription factor ORG2-like protein | HC | ... 193 1e-49
Medtr1g048710.1 | transcription factor ORG2-like protein | HC | ... 189 3e-48
Medtr1g048750.1 | transcription factor ORG2-like protein | HC | ... 182 3e-46
Medtr1g048720.4 | transcription factor ORG2-like protein | HC | ... 177 1e-44
Medtr1g048720.3 | transcription factor ORG2-like protein | HC | ... 171 8e-43
Medtr2g039620.1 | basic helix loop helix (BHLH) DNA-binding fami... 50 3e-06
Medtr2g039620.2 | basic helix loop helix (BHLH) DNA-binding fami... 49 5e-06
Medtr1g082480.1 | basic helix loop helix (BHLH) DNA-binding fami... 48 8e-06
>Medtr1g048720.1 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791151 | 20130731
Length = 247
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 172/264 (65%), Gaps = 34/264 (12%)
Query: 1 MLRFPSPVFSYSNMECLLDDEPFNHNQ--NNFNKERVSSSEYSFPNQPQPAVVLQAKVVE 58
ML P+FS +EP +HNQ N+F K+ V ++F +Q ++A++
Sbjct: 1 MLAISPPMFSTIGWPF---EEPLSHNQHQNSFYKDTVDQL-FNFHDQ------VEAEINS 50
Query: 59 MLTAPSPDT-------KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATIS 111
T PS T KKL HNASERDRRKKIN+L +SLRSLLP DQMKK+SIPATIS
Sbjct: 51 --TDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVF-DQMKKLSIPATIS 107
Query: 112 GVIKYLPELQQQVKGLTKKKEKLLSRISQQGD--AVNEESRKRKKFINPHHNSADFIVSN 169
V+KY+PELQ QV+GL K+K+++L R+S Q + +++ES+++K H ++ F+VS
Sbjct: 108 RVLKYIPELQNQVEGLIKRKDEILLRLSPQVEEFILSKESQRKK-----HSYNSGFVVSI 162
Query: 170 SWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHF 229
S LND E I I + K PL EI++CLEN+G LLN SS++TFGGRVFY LHF
Sbjct: 163 SRLNDSEITIQISCYTVQ-----KIPLSEILICLENDGLLLLNVSSSKTFGGRVFYNLHF 217
Query: 230 QVEKTHRLESDIITQKLLSIYEKK 253
QV+KT LES I+ +KLLSI EK+
Sbjct: 218 QVDKTQILESHILNEKLLSIMEKE 241
>Medtr7g090410.1 | transcription factor, putative | HC |
chr7:35562964-35565110 | 20130731
Length = 260
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/261 (57%), Positives = 186/261 (71%), Gaps = 25/261 (9%)
Query: 1 MLRFPSPVFSYSNM----ECLLDDEPFNHNQNNFNKERVSSSEYSFPNQPQPAVVLQAKV 56
M+ F P FSYSNM E L + +H + N+ +S EYS P + +
Sbjct: 1 MVAFCPPQFSYSNMGWLLEELEPESLISHKEKNY-----ASLEYSLPYHQFSS---PKEH 52
Query: 57 VEMLTAPSPD--TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVI 114
VE+ PSP KKLNHNASERDRRKKINSLI+SLRSLLP G+DQ KKMSIP TIS V+
Sbjct: 53 VEIERPPSPKLMAKKLNHNASERDRRKKINSLISSLRSLLP-GEDQTKKMSIPVTISRVL 111
Query: 115 KYLPELQQQVKGLTKKKEKLLSRIS-QQGDAVNEESRKRKKFINPHHNSADFIVSNSWLN 173
KY+P+LQ+QV+GLTKKKE+LLSRIS +Q AVN+ES+++K P++NSA F+VS S LN
Sbjct: 112 KYIPDLQKQVQGLTKKKEELLSRISHRQEYAVNKESQRKKI---PNYNSA-FVVSTSRLN 167
Query: 174 DCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEK 233
D E IHI S+YE +K PL EI++CLENNG LLN+SS++TFGGR+FY LHFQV+K
Sbjct: 168 DTELVIHI--SSYEA---NKIPLSEILMCLENNGLLLLNSSSSKTFGGRLFYNLHFQVDK 222
Query: 234 THRLESDIITQKLLSIYEKKQ 254
T R E D + QKL SIYEK+Q
Sbjct: 223 TQRYECDDLIQKLSSIYEKQQ 243
>Medtr1g048720.2 | transcription factor ORG2-like protein | HC |
chr1:18792752-18791151 | 20130731
Length = 246
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/264 (48%), Positives = 171/264 (64%), Gaps = 35/264 (13%)
Query: 1 MLRFPSPVFSYSNMECLLDDEPFNHNQ--NNFNKERVSSSEYSFPNQPQPAVVLQAKVVE 58
ML P+FS +EP +HNQ N+F K+ V ++F +Q ++A++
Sbjct: 1 MLAISPPMFSTIGWPF---EEPLSHNQHQNSFYKDTVDQL-FNFHDQ------VEAEINS 50
Query: 59 MLTAPSPDT-------KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATIS 111
T PS T KKL HNASERDRRKKIN+L +SLRSLLP DQMK +SIPATIS
Sbjct: 51 --TDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVF-DQMK-LSIPATIS 106
Query: 112 GVIKYLPELQQQVKGLTKKKEKLLSRISQQGD--AVNEESRKRKKFINPHHNSADFIVSN 169
V+KY+PELQ QV+GL K+K+++L R+S Q + +++ES+++K H ++ F+VS
Sbjct: 107 RVLKYIPELQNQVEGLIKRKDEILLRLSPQVEEFILSKESQRKK-----HSYNSGFVVSI 161
Query: 170 SWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHF 229
S LND E I I + K PL EI++CLEN+G LLN SS++TFGGRVFY LHF
Sbjct: 162 SRLNDSEITIQISCYTVQ-----KIPLSEILICLENDGLLLLNVSSSKTFGGRVFYNLHF 216
Query: 230 QVEKTHRLESDIITQKLLSIYEKK 253
QV+KT LES I+ +KLLSI EK+
Sbjct: 217 QVDKTQILESHILNEKLLSIMEKE 240
>Medtr1g048710.1 | transcription factor ORG2-like protein | HC |
chr1:18783233-18780583 | 20130731
Length = 240
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 142/189 (75%), Gaps = 14/189 (7%)
Query: 67 TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKG 126
KKL HNASERDRRKKIN+L +SLRSLLP DQMK +SIP TIS V+KY+PELQ QV+G
Sbjct: 56 VKKLVHNASERDRRKKINNLYSSLRSLLPVS-DQMK-LSIPGTISRVLKYIPELQNQVEG 113
Query: 127 LTKKKEKLLSRISQQGD--AVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISS 184
L K+K+++L +S Q + +++ES+++K H ++ F+VS SWLND E I I S
Sbjct: 114 LIKRKDEILLGLSPQVEEFILSKESQRKK-----HSYNSGFVVSTSWLNDSEITIQI--S 166
Query: 185 NYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKTHRLESDIITQ 244
Y HK PL EI++CLEN+G LLN SS++TFGGRVFY LHFQV+KTHRLESDI+ +
Sbjct: 167 CYTV---HKIPLSEILMCLENDGLLLLNLSSSQTFGGRVFYNLHFQVDKTHRLESDILNE 223
Query: 245 KLLSIYEKK 253
KLLS+ +K+
Sbjct: 224 KLLSVMDKE 232
>Medtr1g048750.1 | transcription factor ORG2-like protein | HC |
chr1:18804230-18802184 | 20130731
Length = 271
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 124/166 (74%), Gaps = 13/166 (7%)
Query: 67 TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKG 126
KKL HNASERDRRKKIN+L +SLRSLLP DQMKK+SIPATIS V+KY+PE+Q+ V+G
Sbjct: 56 VKKLVHNASERDRRKKINNLYSSLRSLLPIS-DQMKKLSIPATISRVLKYIPEIQKHVEG 114
Query: 127 LTKKKEKLLSRISQQGDAVN--EESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISS 184
L K+KE++L R+S Q + VN +ES+K+K H ++ F+VS SWLND E AI I S
Sbjct: 115 LVKRKEEILLRLSPQVNEVNITKESQKKK-----HSYNSGFVVSTSWLNDSEVAIQI--S 167
Query: 185 NYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQ 230
Y HK PL EI+LCLEN+G LLN SS++TFG R+FY LHFQ
Sbjct: 168 CYTV---HKIPLSEILLCLENDGILLLNVSSSQTFGERIFYNLHFQ 210
>Medtr1g048720.4 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791868 | 20130731
Length = 220
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 155/242 (64%), Gaps = 34/242 (14%)
Query: 1 MLRFPSPVFSYSNMECLLDDEPFNHNQ--NNFNKERVSSSEYSFPNQPQPAVVLQAKVVE 58
ML P+FS +EP +HNQ N+F K+ V ++F +Q ++A++
Sbjct: 1 MLAISPPMFSTIGWPF---EEPLSHNQHQNSFYKDTVDQL-FNFHDQ------VEAEINS 50
Query: 59 MLTAPSPDT-------KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATIS 111
T PS T KKL HNASERDRRKKIN+L +SLRSLLP DQMKK+SIPATIS
Sbjct: 51 --TDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVF-DQMKKLSIPATIS 107
Query: 112 GVIKYLPELQQQVKGLTKKKEKLLSRISQQGD--AVNEESRKRKKFINPHHNSADFIVSN 169
V+KY+PELQ QV+GL K+K+++L R+S Q + +++ES+++K H ++ F+VS
Sbjct: 108 RVLKYIPELQNQVEGLIKRKDEILLRLSPQVEEFILSKESQRKK-----HSYNSGFVVSI 162
Query: 170 SWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHF 229
S LND E I I + K PL EI++CLEN+G LLN SS++TFGGRVFY LHF
Sbjct: 163 SRLNDSEITIQISCYTVQ-----KIPLSEILICLENDGLLLLNVSSSKTFGGRVFYNLHF 217
Query: 230 QV 231
QV
Sbjct: 218 QV 219
>Medtr1g048720.3 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791868 | 20130731
Length = 219
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 154/242 (63%), Gaps = 35/242 (14%)
Query: 1 MLRFPSPVFSYSNMECLLDDEPFNHNQ--NNFNKERVSSSEYSFPNQPQPAVVLQAKVVE 58
ML P+FS +EP +HNQ N+F K+ V ++F +Q ++A++
Sbjct: 1 MLAISPPMFSTIGWPF---EEPLSHNQHQNSFYKDTVDQL-FNFHDQ------VEAEINS 50
Query: 59 MLTAPSPDT-------KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATIS 111
T PS T KKL HNASERDRRKKIN+L +SLRSLLP DQMK +SIPATIS
Sbjct: 51 --TDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVF-DQMK-LSIPATIS 106
Query: 112 GVIKYLPELQQQVKGLTKKKEKLLSRISQQGD--AVNEESRKRKKFINPHHNSADFIVSN 169
V+KY+PELQ QV+GL K+K+++L R+S Q + +++ES+++K H ++ F+VS
Sbjct: 107 RVLKYIPELQNQVEGLIKRKDEILLRLSPQVEEFILSKESQRKK-----HSYNSGFVVSI 161
Query: 170 SWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHF 229
S LND E I I + K PL EI++CLEN+G LLN SS++TFGGRVFY LHF
Sbjct: 162 SRLNDSEITIQISCYTVQ-----KIPLSEILICLENDGLLLLNVSSSKTFGGRVFYNLHF 216
Query: 230 QV 231
QV
Sbjct: 217 QV 218
>Medtr2g039620.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr2:17355333-17360369 | 20130731
Length = 523
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 62 APSPDTKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQ 121
A P + +L+H SER RR+K+N +LR+LLP G + K SI T ++ L
Sbjct: 320 AARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKK-DKASILITAKETLR---SLM 375
Query: 122 QQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFI 156
++ L+K+ ++L+ SQQ A N+ES K K+ +
Sbjct: 376 AEIDKLSKRNQELM---SQQLPAANKESTKTKEIV 407
>Medtr2g039620.2 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr2:17355333-17360530 | 20130731
Length = 418
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 62 APSPDTKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQ 121
A P + +L+H SER RR+K+N +LR+LLP G + K SI T ++ L
Sbjct: 215 AARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKK-DKASILITAKETLR---SLM 270
Query: 122 QQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFI 156
++ L+K+ ++L+ SQQ A N+ES K K+ +
Sbjct: 271 AEIDKLSKRNQELM---SQQLPAANKESTKTKEIV 302
>Medtr1g082480.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr1:36677044-36674657 | 20130731
Length = 337
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 66 DTKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVK 125
+ +++ H A ER+RRK++N ++ LRSL+P +++ + I G I ++ EL+ +
Sbjct: 132 ENQRMTHIAVERNRRKQMNEYLSILRSLMP--DSHIQRGDQASIIGGAINFVKELEHKFH 189
Query: 126 GLTKKKEKLLSRISQQGDAVNEESRKRKKFIN-PHHNSADFIVSNS--------WLNDCE 176
L KKE R+ + +A + +F P ++++ + NS + + +
Sbjct: 190 FLGAKKE----RVVKSDEAGGSNNMPFSEFFTFPQYSTSGSVCDNSNSVATIGEKVGEIQ 245
Query: 177 AAIHIISSNYEEAH------NHKTP--LPEIILCLENNGYFLLNASSTETFGGRVFYILH 228
+ I I E H + K P L +I+ L+N +L+ + T T G V Y L
Sbjct: 246 SCIADIEVTMVENHANLKIRSRKRPKQLLKIVSGLQNMRLTILHLNVT-TIGEIVLYSLS 304
Query: 229 FQVEKTHRLES 239
+VE +L S
Sbjct: 305 VKVEDDCKLGS 315