Miyakogusa Predicted Gene

Lj0g3v0157289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0157289.1 tr|G7KPW4|G7KPW4_MEDTR Lin-54-like protein
OS=Medicago truncatula GN=MTR_6g087590 PE=4
SV=1,51.18,1e-17,seg,NULL,CUFF.9718.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g087590.1 | tesmin/TSO1-like CXC domain protein | HC | chr...    63   7e-11
Medtr8g103320.1 | tesmin/TSO1-like CXC domain protein | HC | chr...    54   2e-08

>Medtr6g087590.1 | tesmin/TSO1-like CXC domain protein | HC |
           chr6:32942677-32948999 | 20130731
          Length = 607

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 52/128 (40%), Gaps = 15/128 (11%)

Query: 1   MGEGEGGDCAPANV-----------PXXXXXXXXXXXXXXLDAPAKKLARQLDFTAL--- 46
           M EGEGGDC P NV                          LD P+KKLARQLDF A+   
Sbjct: 1   MAEGEGGDCPPKNVVHPEFVTVTAAAATAAAAANATATAWLDVPSKKLARQLDFNAMLME 60

Query: 47  -SEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVGKPESPKSKPRPNFEIK 105
            S+                                     VRVGK ESPK + RPNFE+K
Sbjct: 61  QSKPQQQVVTQGSVMVQKPVGVGGLPMPVPAQVQTLQHSSVRVGKQESPKPRSRPNFEVK 120

Query: 106 EATPKKQK 113
           E TPKKQ+
Sbjct: 121 EGTPKKQR 128


>Medtr8g103320.1 | tesmin/TSO1-like CXC domain protein | HC |
           chr8:43471929-43476739 | 20130731
          Length = 478

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 48/113 (42%), Gaps = 30/113 (26%)

Query: 1   MGEGEGGDCAPANVPXXXXXXXXXXXXXXLDAPAKKLARQLDFTALSEXXXXXXXXXXXX 60
           MGEGEG D  P N P              LD+  KKLARQLDF A               
Sbjct: 1   MGEGEGSDIPPKNAP--------------LDS-VKKLARQLDFNAFG------------- 32

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXVRVGKPESPKSKPRPNFEIKEATPKKQK 113
                                     ++GKPESPKSK RPNFE K+ATPKKQK
Sbjct: 33  --GTPVTAPLPEHPQPSPTLPPLPATKLGKPESPKSKSRPNFETKDATPKKQK 83