Miyakogusa Predicted Gene

Lj0g3v0156549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156549.1 Non Characterized Hit- tr|K4A4M1|K4A4M1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si033825,27.99,9e-19,seg,NULL; PUTATIVE UNCHARACTERIZED
PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),CUFF.9674.1
         (274 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g123110.1 | calcium-dependent lipid-binding-like protein |...   469   e-132
Medtr5g013780.1 | vacuolar protein sorting protein | HC | chr5:4...   105   6e-23

>Medtr4g123110.1 | calcium-dependent lipid-binding-like protein | HC |
            chr4:50875754-50826418 | 20130731
          Length = 4257

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/277 (85%), Positives = 251/277 (90%), Gaps = 6/277 (2%)

Query: 1    MKLHSLKIKDELQGRLSVAPSYLAVSVLKNETLXXXXXXXXXHGKDMSLGLPDDDDSFMD 60
            MKLHSLKIKDELQGRLSV+P YLAVSVLKNETL         HGKD S G+PDDDDSFMD
Sbjct: 1029 MKLHSLKIKDELQGRLSVSPQYLAVSVLKNETLCSSSDS---HGKDNSFGIPDDDDSFMD 1085

Query: 61   ALSEFMSQTDVGY-LHNMDLDQQGLMGIASDFESLENLIHEKEIEKGKGTPREVYYEAEG 119
            ALS+F+SQTD G+ LHNM+LDQQGLMGIASDFESLE+LIHEKEIE G  TP E YYEAEG
Sbjct: 1086 ALSDFISQTDGGHSLHNMELDQQGLMGIASDFESLESLIHEKEIETGNSTPHEEYYEAEG 1145

Query: 120  SDTSNFVSLSFSTRSSGSPDYNGIDTQMCVRMSKLEFFCNRPTIVALISFGLDISSGNKM 179
            SDTSNFVS+SFSTRS GSPDY+GIDTQMCVRMSKLEFFCNRPTIVALISFGLDISSGNK+
Sbjct: 1146 SDTSNFVSMSFSTRSPGSPDYDGIDTQMCVRMSKLEFFCNRPTIVALISFGLDISSGNKV 1205

Query: 180  TS--HTSETSPERPSVKERTDEKGRVKGLLGFGKERVVFYLNMNVDSVTIFLNKEDDSQL 237
            TS   T +TSPERP VKERTDEKGRV+GLLGFGKERVVF+LNMN+DSVTIFLNKED SQL
Sbjct: 1206 TSDADTLKTSPERPLVKERTDEKGRVRGLLGFGKERVVFHLNMNMDSVTIFLNKEDGSQL 1265

Query: 238  AKLVQESFLMDLKVHPSSLSIDGTLGNFRLCDTSLGT 274
            AKLVQESFLMDLKVHPSSLSIDGTLGNFRLCDTSLG+
Sbjct: 1266 AKLVQESFLMDLKVHPSSLSIDGTLGNFRLCDTSLGS 1302


>Medtr5g013780.1 | vacuolar protein sorting protein | HC |
            chr5:4444545-4498541 | 20130731
          Length = 4324

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 119  GSDTSNFVSLSFSTRSSGSPDYNGIDTQMCVRMSKLEFFCNRPTIVALISF--GLDISSG 176
            G    +FV          S  YN  D Q+ V ++ L FFC RPTI+A++ F   ++I   
Sbjct: 1103 GDKLESFVKAQIVIYDQNSTRYNNTDKQVIVTLATLTFFCRRPTILAIMEFINSINIEDR 1162

Query: 177  NKMTSHTSETSPERPSVKERTD-------EKGRVKGLLGFGKERVVFYLNMNVDSVTIFL 229
            N  TS  S ++     V    D       E+  VKGLLG GK RV+F L + +    I L
Sbjct: 1163 NLATSSESSSAIVENDVSRDLDDLNATTVEELAVKGLLGKGKSRVMFNLTLKMAQAQILL 1222

Query: 230  NKEDDSQLAKLVQESFLMDLKVHPSSLSIDGTLGNFRLCDTSL 272
             KED+++LA L QES L D+KV PSS SI   LGN ++ D SL
Sbjct: 1223 MKEDETKLACLSQESLLADIKVFPSSFSIKAALGNLKISDDSL 1265