Miyakogusa Predicted Gene

Lj0g3v0156239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156239.1 tr|F4ITP5|F4ITP5_ARATH TraB family protein
OS=Arabidopsis thaliana GN=At2g32340 PE=4 SV=1,40.71,2e-19,
,gene.Ljchr0_pseudomol_20120828.path1.gene15742.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515...   119   5e-28
Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751...    68   2e-12

>Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515053
           | 20130731
          Length = 358

 Score =  119 bits (299), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 76/135 (56%), Gaps = 44/135 (32%)

Query: 2   LPVELSRNVLFLSCESSAEGGVCDVYVLGTCHVS----------------EAVFLELCWR 45
           LP ELSRNV+ LSCESSAEGGVCDVY++GT HVS                EAVFLELC  
Sbjct: 74  LPEELSRNVIVLSCESSAEGGVCDVYLVGTAHVSEESSKEVQAIVSLLKPEAVFLELCSS 133

Query: 46  RRGALTRKTL----------------------------KIGSELGVIPGSEFRVAYEEAN 77
           R   LT + L                            KI S+L V PGSEFRVAYEEA 
Sbjct: 134 RVQVLTLQNLKVPTMREMIELLKKNRNMFEVLYGWFLAKIASKLEVFPGSEFRVAYEEAI 193

Query: 78  KYGGRVALGDRPIQV 92
           KYGGRV LGDRP+Q+
Sbjct: 194 KYGGRVILGDRPVQI 208


>Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751683
           | 20130731
          Length = 307

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 45/136 (33%)

Query: 2   LPVELSRNVLFLSCESSAEGGVCDVYVLGTCH----------------VSEAVFLELCWR 45
           LP EL++NV+ LSC+S  +GGVCDVY++GT H                  E VFLELC  
Sbjct: 51  LPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCSD 110

Query: 46  RRGALTRKTL-----------------------------KIGSELGVIPGSEFRVAYEEA 76
           R+  L    +                             +I S     P ++FR AY+EA
Sbjct: 111 RQEVLLHDNMEALTMGEMNDAMRKEKYSIFRMVTSWLDAEIDSRCDGYPFAQFRSAYKEA 170

Query: 77  NKYGGRVALGDRPIQV 92
            KY G V LGDR +++
Sbjct: 171 IKYSGIVVLGDRRLEI 186