Miyakogusa Predicted Gene

Lj0g3v0156189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156189.1 Non Characterized Hit- tr|E1Z2L9|E1Z2L9_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,31.94,2e-18,TraB,Pheromone shutdown, TraB; seg,NULL;
SUBFAMILY NOT NAMED,NULL; PHEROMONE SHUTDOWN PROTEIN,NULL,CUFF.9783.1
         (142 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515...   220   4e-58
Medtr4g046663.1 | TraB family protein | HC | chr4:16444991-16443...    99   1e-21
Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751...    74   6e-14
Medtr1g101540.1 | TraB family protein | HC | chr1:45862642-45859...    58   3e-09

>Medtr4g046707.1 | TraB family protein | HC | chr4:16509081-16515053
           | 20130731
          Length = 358

 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 118/142 (83%)

Query: 1   MPLWHKTKLVYNLLFQAVFLPSSDDLNKMLKEMDDNDMLTLVIQEMSKEFPTLMETLVHE 60
           MPLW+KTKLVY+LLFQAVFLPSSDDLN MLKEMDD+DMLTLVIQEMSKEFPTLMETLVHE
Sbjct: 217 MPLWYKTKLVYSLLFQAVFLPSSDDLNNMLKEMDDSDMLTLVIQEMSKEFPTLMETLVHE 276

Query: 61  RDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDLMTIPSPKPGISALKVF 120
           RD+YMS  LL+VA ++  VVAVVGKGHLQG+KK+WKQ VV+ DLMT+PSPKP ISA++VF
Sbjct: 277 RDQYMSSTLLKVASESRSVVAVVGKGHLQGMKKNWKQPVVIKDLMTVPSPKPAISAMRVF 336

Query: 121 TXXXXXXXXXXXXXXXYLSCKK 142
           T               YLSCKK
Sbjct: 337 TSVGVGVAGVAIISGIYLSCKK 358


>Medtr4g046663.1 | TraB family protein | HC | chr4:16444991-16443955
           | 20130731
          Length = 93

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 59/76 (77%)

Query: 46  MSKEFPTLMETLVHERDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDLM 105
           MSK  PT+METLVHERD+YMS  LL+ A ++  VVAVVG+ HL+G+K +WKQ V + DL 
Sbjct: 1   MSKTLPTVMETLVHERDQYMSYTLLKGASESRTVVAVVGRMHLEGMKNNWKQPVNIEDLQ 60

Query: 106 TIPSPKPGISALKVFT 121
           TIP PKP + A+K+FT
Sbjct: 61  TIPPPKPIVLAIKIFT 76


>Medtr6g055230.1 | TraB family protein | HC | chr6:19756417-19751683
           | 20130731
          Length = 307

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query: 50  FPTLMETLVHERDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDL 104
           FPT+ E +VHERD+YMS  LL VA ++  VVAVVG+GHL+GIKK+WKQ + + +L
Sbjct: 207 FPTIREAMVHERDRYMSHTLLTVARKSRTVVAVVGEGHLEGIKKNWKQPIEIQEL 261


>Medtr1g101540.1 | TraB family protein | HC | chr1:45862642-45859318
           | 20130731
          Length = 380

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 22  SSDDLNKMLKEMDDNDMLTLVIQEMSKEFPTLMETLVHERDKYMSCALLRVACQNSC--V 79
           SSD     L++   ND    + +++S  +P+L+  L+HERD Y++ +L R    N+C  V
Sbjct: 248 SSDISTDKLEKASSNDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRV 307

Query: 80  VAVVGKGHLQGI 91
           V V+GKGH+ G+
Sbjct: 308 VGVIGKGHMNGV 319