Miyakogusa Predicted Gene

Lj0g3v0155879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0155879.1 Non Characterized Hit- tr|I1JZC3|I1JZC3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48587 PE,90.15,0,no
description,ATPase-like, ATP-binding domain; no description,Ribosomal
protein S5 domain 2-type fo,gene.g11938.t1.1
         (315 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | H...   496   e-140
Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | H...   123   2e-28
Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal ...    95   7e-20

>Medtr3g005810.1 | DNA mismatch repair protein MLH1, putative | HC |
           chr3:403887-391690 | 20130731
          Length = 719

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/262 (89%), Positives = 251/262 (95%)

Query: 3   PPKIQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDD 62
           PPKIQRL+ESVVNRIAAGEVIQRPVSAVKEL+ENSLDA STSINL IKDGGLKLIQVSDD
Sbjct: 4   PPKIQRLAESVVNRIAAGEVIQRPVSAVKELVENSLDAASTSINLTIKDGGLKLIQVSDD 63

Query: 63  GHGVRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKLH 122
           GHG+R EDLPILCERHTTSKLSAFEDLQ I SMGFRGEALASMTYV HVTVTTITKG+LH
Sbjct: 64  GHGIRREDLPILCERHTTSKLSAFEDLQRITSMGFRGEALASMTYVAHVTVTTITKGQLH 123

Query: 123 GYRVSYRDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDDYSKIVDLVSRFA 182
           GYRVSYRDGVME EP+PCAAVKGTQIMVENLFYNMAAR+KTLQ+SSDDYSKIVD+VSRFA
Sbjct: 124 GYRVSYRDGVMEQEPRPCAAVKGTQIMVENLFYNMAARKKTLQNSSDDYSKIVDVVSRFA 183

Query: 183 IHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPSTSCFE 242
           IHHTNV FSCRKHGAVKADVHTV+TSSRLDAIR+VYGVS A NL+E++ASDNDPS+S FE
Sbjct: 184 IHHTNVSFSCRKHGAVKADVHTVATSSRLDAIRTVYGVSAAHNLIEVQASDNDPSSSIFE 243

Query: 243 MHGYISNANHAAKKITMVLFIN 264
           MHGY+SNAN+AAKKITMVLFIN
Sbjct: 244 MHGYVSNANYAAKKITMVLFIN 265


>Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | HC |
           chr1:39690274-39683612 | 20130731
          Length = 933

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 6   IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDDGHG 65
           I+ +++ +V+RI +G+VI    SAVKEL+ENSLDAG+TSI + +KD G +  QV D+G G
Sbjct: 8   IKPIAKGIVHRICSGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEEWFQVIDNGCG 67

Query: 66  VRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKLHGYR 125
           +      +L  +H TSKLS F DLQS+ + GFRGEAL+S+  +G++T+ T T  +     
Sbjct: 68  ISPNSFKVLGLKHHTSKLSEFHDLQSLTTFGFRGEALSSLCALGNLTIETRTVNEPVATH 127

Query: 126 VSYR-DGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSS-SDDYSKIVDLVSRFAI 183
           +++   GV+  E K    + GT + V+ LF ++  R K  + +   +Y K+  L++ +A+
Sbjct: 128 LTFNHSGVLVAEKKIARQI-GTTVTVKKLFSSLPVRSKEFKRNIRKEYGKLASLLNAYAL 186

Query: 184 HHTNVGFSC 192
               V F C
Sbjct: 187 IAKGVRFGC 195


>Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal
           domain protein | HC | chr5:9761916-9752005 | 20130731
          Length = 1232

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 28/272 (10%)

Query: 6   IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDDGHG 65
           ++ L ESV + I +   +      V+EL+ NSLDA +T +++ + D G   ++V DDG G
Sbjct: 4   VRPLPESVRSSIRSAFSLFDFTRIVEELVYNSLDARATKVSVFV-DIGSCYLKVVDDGGG 62

Query: 66  VRFEDLPILCERHTTSKLSAFEDLQSI-KSMGFRGEALASMTYVGHVTVTTITKGKLHGY 124
           +  + L ++ ER+ TSK     DL +  ++ GFRGEALAS++ V  + + T   G+ +GY
Sbjct: 63  ITRDGLELVGERYATSKFLNLADLNATSENFGFRGEALASISEVSLLEIVTRAYGRPNGY 122

Query: 125 RVSYRDGVMEHEPKPCAAVK----------GTQIMVENLFYNMAARRKTLQSSSDD-YSK 173
           R      V+    K C  +           GT ++V  +FYN   RRK +QSS +     
Sbjct: 123 R-----KVL----KGCKCIYLGIDDDRKEVGTTVIVSEIFYNQPVRRKQIQSSPNKVLQS 173

Query: 174 IVDLVSRFAIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASD 233
           I   V R A+   N+ F             + S +S L  + + +GV V  +L E+E  +
Sbjct: 174 IKKCVMRLALVCPNISFKVVDIEREYELFCSHSAASPLSLVTTGFGVEVTNSLHELEV-E 232

Query: 234 NDPSTSCFEMHGYISN-ANHAAKKITMVLFIN 264
           ND      ++ GYIS   N    K    L+IN
Sbjct: 233 ND----IIKLTGYISGPCNTLDMKALQYLYIN 260