Miyakogusa Predicted Gene

Lj0g3v0155229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0155229.1 Non Characterized Hit- tr|I3J7C6|I3J7C6_ORENI
Uncharacterized protein OS=Oreochromis niloticus
GN=WD,26.15,4e-18,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; seg,NULL; WD40
repeats,WD,CUFF.9645.1
         (389 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g086605.1 | transducin/WD-like repeat-protein | HC | chr8:...   610   e-175
Medtr8g086605.2 | transducin/WD-like repeat-protein | HC | chr8:...   564   e-161
Medtr3g061450.1 | transducin/WD-like repeat-protein | HC | chr3:...    51   2e-06

>Medtr8g086605.1 | transducin/WD-like repeat-protein | HC |
           chr8:35940332-35933082 | 20130731
          Length = 394

 Score =  610 bits (1574), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/390 (76%), Positives = 330/390 (84%), Gaps = 3/390 (0%)

Query: 2   AEKEAEQPKLNPQPPAVKLKPRRLKGHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRC 61
            E EAE+  LN QPP  KLK RRLKGHKDS NCCIASPQNP +IVTSG+DG VCWFDLRC
Sbjct: 6   VEAEAER-TLNLQPPETKLKARRLKGHKDSVNCCIASPQNPRIIVTSGEDGRVCWFDLRC 64

Query: 62  SDEAQLVMDVSTEAVVSLCFKPGKEDNIYVSSGKEINCFDVRLATAKWEPLESYNYNKEE 121
           +DE Q+ MDVS + ++SLCFK G EDNIYVSSGKEI CFDVRLAT KWEPLE+YNYNKEE
Sbjct: 65  NDEPQIAMDVSDDPILSLCFKSGNEDNIYVSSGKEIKCFDVRLATTKWEPLENYNYNKEE 124

Query: 122 INKVTCNSRSSFLAAADDSGEVKIIDIRQQCLHKTLRA--GHTSICSSVEFLPWRSWEVI 179
           INKVTCNS+SSFLAAADDSGEVKIIDIRQ CL+KTLRA  GHTSICS+VEFLPWRSWEVI
Sbjct: 125 INKVTCNSKSSFLAAADDSGEVKIIDIRQHCLYKTLRAETGHTSICSTVEFLPWRSWEVI 184

Query: 180 SGGLDSALVWWDFSNGRHNKIANFGNVSSSNAGQCYNPSFIHAIAVPETDMIDKLDKICX 239
           SGGLDS LV W+FS  R  K+ NFGNVS+S AGQC+NPS IHAIAVPE DM+DKL KIC 
Sbjct: 185 SGGLDSTLVLWEFSKARPYKVLNFGNVSNSGAGQCFNPSLIHAIAVPEIDMVDKLGKICA 244

Query: 240 XXXXXXXXXXXXEAEIACMKSKGFSNSRKGSQSRPKQGSSTSNTDADQNGRRRLQLDYTL 299
                       E+EIA ++SK  SN+RKGSQSR K GSS++NTDAD N ++RLQ DYT+
Sbjct: 245 VAGGDVINVIDIESEIAAVRSKSSSNTRKGSQSRLKGGSSSNNTDADDNVKKRLQFDYTI 304

Query: 300 GGHNAAVSSLEFSLFGERGKFLVSGGNDRLVKVWNWSSYRDAGISDGNNDILHLNIGVPQ 359
           GGH +AVSSL FS+FGERGKFL+SGGND+LVKVWNWS Y DAG SDGNNDILHLNIGVPQ
Sbjct: 305 GGHTSAVSSLAFSMFGERGKFLISGGNDKLVKVWNWSRYTDAGSSDGNNDILHLNIGVPQ 364

Query: 360 KVNCLCTTTADTDNLVVCDTSKTVKVYSVT 389
           KVN LCTT+ADTDNLVVCDTSKTVKV+S+T
Sbjct: 365 KVNWLCTTSADTDNLVVCDTSKTVKVHSLT 394


>Medtr8g086605.2 | transducin/WD-like repeat-protein | HC |
           chr8:35940331-35933149 | 20130731
          Length = 377

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/362 (75%), Positives = 303/362 (83%), Gaps = 3/362 (0%)

Query: 2   AEKEAEQPKLNPQPPAVKLKPRRLKGHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRC 61
            E EAE+  LN QPP  KLK RRLKGHKDS NCCIASPQNP +IVTSG+DG VCWFDLRC
Sbjct: 6   VEAEAER-TLNLQPPETKLKARRLKGHKDSVNCCIASPQNPRIIVTSGEDGRVCWFDLRC 64

Query: 62  SDEAQLVMDVSTEAVVSLCFKPGKEDNIYVSSGKEINCFDVRLATAKWEPLESYNYNKEE 121
           +DE Q+ MDVS + ++SLCFK G EDNIYVSSGKEI CFDVRLAT KWEPLE+YNYNKEE
Sbjct: 65  NDEPQIAMDVSDDPILSLCFKSGNEDNIYVSSGKEIKCFDVRLATTKWEPLENYNYNKEE 124

Query: 122 INKVTCNSRSSFLAAADDSGEVKIIDIRQQCLHKTLRA--GHTSICSSVEFLPWRSWEVI 179
           INKVTCNS+SSFLAAADDSGEVKIIDIRQ CL+KTLRA  GHTSICS+VEFLPWRSWEVI
Sbjct: 125 INKVTCNSKSSFLAAADDSGEVKIIDIRQHCLYKTLRAETGHTSICSTVEFLPWRSWEVI 184

Query: 180 SGGLDSALVWWDFSNGRHNKIANFGNVSSSNAGQCYNPSFIHAIAVPETDMIDKLDKICX 239
           SGGLDS LV W+FS  R  K+ NFGNVS+S AGQC+NPS IHAIAVPE DM+DKL KIC 
Sbjct: 185 SGGLDSTLVLWEFSKARPYKVLNFGNVSNSGAGQCFNPSLIHAIAVPEIDMVDKLGKICA 244

Query: 240 XXXXXXXXXXXXEAEIACMKSKGFSNSRKGSQSRPKQGSSTSNTDADQNGRRRLQLDYTL 299
                       E+EIA ++SK  SN+RKGSQSR K GSS++NTDAD N ++RLQ DYT+
Sbjct: 245 VAGGDVINVIDIESEIAAVRSKSSSNTRKGSQSRLKGGSSSNNTDADDNVKKRLQFDYTI 304

Query: 300 GGHNAAVSSLEFSLFGERGKFLVSGGNDRLVKVWNWSSYRDAGISDGNNDILHLNIGVPQ 359
           GGH +AVSSL FS+FGERGKFL+SGGND+LVKVWNWS Y DAG SDGNNDILHLNIGVPQ
Sbjct: 305 GGHTSAVSSLAFSMFGERGKFLISGGNDKLVKVWNWSRYTDAGSSDGNNDILHLNIGVPQ 364

Query: 360 KV 361
           KV
Sbjct: 365 KV 366


>Medtr3g061450.1 | transducin/WD-like repeat-protein | HC |
           chr3:24506567-24498548 | 20130731
          Length = 313

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 23/182 (12%)

Query: 19  KLKPRRLKGHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLR---CSDEAQLVMDVSTEA 75
           K+K   LKGH DS +     P++P LI T+  D  V  +D R   CS +A+L     +  
Sbjct: 55  KVKDIELKGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAEL-----SGE 109

Query: 76  VVSLCFKPGKEDNIYVSSGK---EINCFDVRLATAKWEPLESYNYNKEEINKVTCNSRSS 132
            +++ +KP   D  +V+ G    E+   DVR    K++P+    +N  E+N++  N    
Sbjct: 110 NINITYKP---DGTHVAVGNRDDELTILDVR----KFKPMHRRKFNY-EVNEIAWNMTGE 161

Query: 133 FLAAADDSGEVKIIDIRQQCLHKTLRAGHTSICSSVEFLP-WRSWEVISGGLDSALVWWD 191
                  +G V+++         TL A HT+ C  +   P  R + V  G  DS +  W 
Sbjct: 162 MFFLTTGNGTVEVLSYPSLRPLDTLMA-HTAGCYCIAIDPTGRHFAV--GSADSLVSLWV 218

Query: 192 FS 193
            S
Sbjct: 219 IS 220