Miyakogusa Predicted Gene

Lj0g3v0154809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154809.1 tr|G5BKU6|G5BKU6_HETGA DNA excision repair
protein ERCC-1 OS=Heterocephalus glaber GN=GW7_13342
PE=4,46.48,0.0000000001,Rad10,DNA repair protein rad10; no
description,NULL; seg,NULL; Q9FWD8_ORYSA_Q9FWD8;,DNA repair
prote,CUFF.9658.1
         (398 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082570.1 | DNA excision repair protein ERCC-1 | HC | chr1...   544   e-155

>Medtr1g082570.1 | DNA excision repair protein ERCC-1 | HC |
           chr1:36743010-36747217 | 20130731
          Length = 401

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/378 (71%), Positives = 293/378 (77%), Gaps = 6/378 (1%)

Query: 2   EEEEQNNDTNTKKKSSSVVIRIPSYQEVVESSQARSTPPSLFVPSQTFSQAFAFIKSSEF 61
           E E+QNN  N   K SS VIRIPSYQEV+ESSQ +STPPSLFVPSQTFSQAFAF+KSSEF
Sbjct: 4   EAEKQNNSIN---KKSSTVIRIPSYQEVIESSQTKSTPPSLFVPSQTFSQAFAFVKSSEF 60

Query: 62  YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXRNAILVSHRQKGN 120
           Y                                              RNAILVS+RQKGN
Sbjct: 61  YSPPPSLPKENAPSNASSSTPSTSSATNNAPAASPNLPNSNSQPTQNRNAILVSNRQKGN 120

Query: 121 PLLKHIRNVKWTFADVVCDYLLGQSSCAIYISLRYHLLHPDYLYYRIRELQKNFKLRXXX 180
           PLLKHIRNV+WTFADVVCD+LLGQSSCA+Y+SLRYHLLHPDYLY+RIRELQKNFKLR   
Sbjct: 121 PLLKHIRNVRWTFADVVCDFLLGQSSCALYLSLRYHLLHPDYLYHRIRELQKNFKLRVVL 180

Query: 181 XXXXXXXXXKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTD 240
                    KPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTD
Sbjct: 181 CHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTD 240

Query: 241 YLSRLTHALTTVRHVNKTDVVTLGTTFGSLSHIMGASMEDLARCPGIGERKVKRLFDTFH 300
           YLSRLTHALTTVRHVNKTDVVTLGT FGSLS+IMGASMEDLARCPGIGERKVKRLFDTFH
Sbjct: 241 YLSRLTHALTTVRHVNKTDVVTLGTNFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFH 300

Query: 301 EPFKRVESSRQAVPETSAQNKPASPDPLMRNNAESSSLIKD--KDVEDVSKRRKEEPELT 358
           EPFKRVESSRQA+PETS QN+P S D  + NN ESSS ++D  KD +  SKR+K+EPE T
Sbjct: 301 EPFKRVESSRQAIPETSVQNQPTSQDTSVINNTESSSSLEDIHKDADSASKRKKKEPEFT 360

Query: 359 VKSALSAAFAKYSDRVGK 376
           V+SALS AFAK S+R GK
Sbjct: 361 VRSALSVAFAKLSERAGK 378