Miyakogusa Predicted Gene

Lj0g3v0154719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154719.1 tr|A9S0J3|A9S0J3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72978
,40.17,0.0000000000001,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL,CUFF.9567.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0240.1 | hypothetical protein | HC | scaffold0004:1020...   352   2e-97

>Medtr0004s0240.1 | hypothetical protein | HC |
           scaffold0004:102002-96075 | 20130731
          Length = 354

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/219 (84%), Positives = 195/219 (89%), Gaps = 18/219 (8%)

Query: 10  SC-RLLPYHVVADYEAEEDDRILDSDTTGQVLSRSQQWDNNIAAKIAEFTATFEKQALAF 68
           +C RLLPYHVVADYEAEEDDRILDSDTTGQ+LSRSQQWDNNIAAKIAEFTATFEKQALAF
Sbjct: 140 ACERLLPYHVVADYEAEEDDRILDSDTTGQMLSRSQQWDNNIAAKIAEFTATFEKQALAF 199

Query: 69  NIISQKRNLGEFRSEERLMIEQALLQEEKRALM-----------AGREAHEAKLRMAAMY 117
           NIISQKR+LGEFRSEERLMIEQALLQEEKRAL+           AGREAHEAKLRMAAMY
Sbjct: 200 NIISQKRSLGEFRSEERLMIEQALLQEEKRALIELRAELESREKAGREAHEAKLRMAAMY 259

Query: 118 QAE-QARAESHSHAEMMSRAPIRGSALGSQGSG-DMMGHDMGEQDQGGHPGDMMNGWGNN 175
           QAE QARA+S SHAEMMSRAPIRGSALGSQGS   ++GHDMG+QD     G+MMNGWGNN
Sbjct: 260 QAEQQARADSQSHAEMMSRAPIRGSALGSQGSDIGIVGHDMGDQDH----GEMMNGWGNN 315

Query: 176 AHREEKEPSEDFLNDEAENGDTGTQDGWREVGEFDLNAR 214
           A R+EKEPSEDFLNDEAENGDTGT DGWREVGEFDLNAR
Sbjct: 316 AQRDEKEPSEDFLNDEAENGDTGTPDGWREVGEFDLNAR 354