Miyakogusa Predicted Gene

Lj0g3v0154439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154439.1 Non Characterized Hit- tr|C4WYI8|C4WYI8_TRIDB
Putative TdLSC28 protein (SMC6) (Fragment)
OS=Triticum,54.93,5e-16,STRUCTURAL MAINTENANCE OF CHROMOSOMES 6
SMC6,NULL; STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5,
,CUFF.9559.1
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036760.1 | structural maintenance-like chromosomes-protei...   341   5e-94
Medtr4g061050.1 | structural maintenance-like chromosomes-protei...   322   3e-88

>Medtr4g036760.1 | structural maintenance-like chromosomes-protein |
           HC | chr4:13404550-13426772 | 20130731
          Length = 1059

 Score =  341 bits (874), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 178/277 (64%), Positives = 206/277 (74%), Gaps = 12/277 (4%)

Query: 1   MAEHEHAAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQF 60
           M   E AA+   T  SSVDEI E ISEI KK  EEQVLL++L+Q++HEA GKADDLK +F
Sbjct: 700 MTMKEQAAKSSSTPLSSVDEIVEEISEINKKIKEEQVLLEDLEQRRHEAVGKADDLKGKF 759

Query: 61  DKLCESTNGXXXXXXXXXXXXXXY------------HYDGVMKNKVLRDIQEAEEHNLVL 108
           D+LCES N                            HYD VMK +VL DI+EAEEH L L
Sbjct: 760 DELCESVNTELASLEKAESELMEIEREIDSAKKAKDHYDNVMKTRVLHDIKEAEEHCLEL 819

Query: 109 TKRREEFVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLR 168
           TKRRE  +EKASIICC NEL +LGGCDG TPE+IS QLE +  TLRRES RYSESI+DLR
Sbjct: 820 TKRREVNLEKASIICCQNELATLGGCDGVTPEQISGQLESLNHTLRRESRRYSESIEDLR 879

Query: 169 MLYAKKERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRK 228
           MLYAKKERKI KRQQVYK LRQKL+AC+RAL+ RR KFQ NA  +K QL WKFN+HL++K
Sbjct: 880 MLYAKKERKIIKRQQVYKTLRQKLNACQRALEFRRTKFQKNADNLKLQLCWKFNSHLKKK 939

Query: 229 GISGLIRVNYEKETLLIEVQMPQDASNKAVQDTRGLS 265
           GISG+I+V+YE+ TL IEVQMPQDASN+AV+DTRGLS
Sbjct: 940 GISGVIKVDYEQMTLSIEVQMPQDASNRAVRDTRGLS 976


>Medtr4g061050.1 | structural maintenance-like chromosomes-protein |
           HC | chr4:22524260-22500548 | 20130731
          Length = 1061

 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 199/273 (72%), Gaps = 12/273 (4%)

Query: 5   EHAAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQFDKLC 64
           + A E      SSVDEI E ISEI +K  EEQVLL+ L+Q+++EA GKADDLK +FD+LC
Sbjct: 703 QQATESSSAPLSSVDEIVEEISEINQKMKEEQVLLEGLEQRRYEAEGKADDLKVKFDELC 762

Query: 65  ESTNGXXXXXXXXXXXXXXY------------HYDGVMKNKVLRDIQEAEEHNLVLTKRR 112
           ES N                            HY+  MK  VL DI+EAEEH L LTK R
Sbjct: 763 ESANTELASLEKSENELIEIERQIDAATEAKDHYENFMKTNVLHDIKEAEEHYLELTKSR 822

Query: 113 EEFVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLRMLYA 172
           E+ V+KASIIC  ++L SLGGCDG TPE+ISA++E +  TLRRES RYSESIDDLRMLYA
Sbjct: 823 EDNVKKASIICRQDDLASLGGCDGKTPEQISAEIESLNHTLRRESKRYSESIDDLRMLYA 882

Query: 173 KKERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRKGISG 232
           KKERKI KRQQVYKALRQKL+AC  AL+ RR KFQTNA+ +K QLSWKFN  L+RKGISG
Sbjct: 883 KKERKIIKRQQVYKALRQKLNACHNALEFRRRKFQTNATNLKHQLSWKFNGLLKRKGISG 942

Query: 233 LIRVNYEKETLLIEVQMPQDASNKAVQDTRGLS 265
           LI+V+Y++ TL IEVQMPQD SN+AV+DTRGLS
Sbjct: 943 LIKVDYDETTLSIEVQMPQDTSNRAVRDTRGLS 975