Miyakogusa Predicted Gene
- Lj0g3v0153719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0153719.1 tr|G7ZY41|G7ZY41_MEDTR Vascular protein
OS=Medicago truncatula GN=MTR_066s1023 PE=4 SV=1,89.33,0,
,NODE_23204_length_1104_cov_134.116852.path3.1
(254 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g079820.1 | transducin/WD40 repeat protein | HC | chr8:342... 490 e-139
Medtr5g017810.1 | transducin/WD-like repeat-protein | HC | chr5:... 397 e-111
>Medtr8g079820.1 | transducin/WD40 repeat protein | HC |
chr8:34235279-34253775 | 20130731
Length = 1616
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 227/254 (89%), Positives = 243/254 (95%)
Query: 1 MEGHAKISPISRVPLITVLDTKHHLNDFPVCEPFHLELNFFNKANRVLHYPARAFYVDGL 60
MEGH KISPISR+PLITVLDTKHHL DFPVCEP+HLELNFFNKANRVLHYP+RAFY+DGL
Sbjct: 421 MEGHMKISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDGL 480
Query: 61 NLMAHNLSSGSDSIYRKLYNSIPGSVEYRAKYLVYSKKQRLFLVVYEFSGATNEVVFYWE 120
NLMAH+LSSGSD IYRKLYNSIPG+VEYRAKYL++SKKQRLFLVVYEFSG+TNEVV YWE
Sbjct: 481 NLMAHSLSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYWE 540
Query: 121 NTDAQTANSKSSTVKGRDAAFIGSNENQFAILDDDRTGLAVYTLPGGASKEAKDNDKVFE 180
NTD QT NSKSSTVKGRDAAFIGSNENQFAILD+DRTGLA+YTLPGG S+E KDNDKVFE
Sbjct: 541 NTDVQTGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKDNDKVFE 600
Query: 181 ENQPAETSVGSIRGPTPFMFETEVDRIFSTPIDSTLMFASHGNQIGQVKLIQGYRLSTST 240
ENQP ET+VGSIRGPTPFMFETEVDRIFSTP+DSTLMFASHGNQIG VKLI+GYRLSTST
Sbjct: 601 ENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTST 660
Query: 241 ANGHYISTNSEGKK 254
ANGHYIST S+GKK
Sbjct: 661 ANGHYISTKSDGKK 674
>Medtr5g017810.1 | transducin/WD-like repeat-protein | HC |
chr5:6583166-6575605 | 20130731
Length = 740
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/258 (76%), Positives = 217/258 (84%), Gaps = 4/258 (1%)
Query: 1 MEGHAKISPISRVPLITVLDTKHHLNDFPVCEPFHLELNFFNKANRVLHYPARAFYVDGL 60
MEGH K +PISR+PLI VLDTKH L D PV +PFHLELNFFNK NRVLHYP RAFYVDG
Sbjct: 421 MEGHTKSAPISRLPLIAVLDTKHRLKDIPVAQPFHLELNFFNKENRVLHYPVRAFYVDGP 480
Query: 61 NLMAHNLSSGSDSIYRKLYNSIPGSVEYRAKYLVYSKKQRLFLVVYEFSGATNEVVFYWE 120
+LMA+NLSSG ++ YRKLYNSIPG VEY+A YL+YSKKQ LFLV +EFSG TNEVV Y E
Sbjct: 481 DLMAYNLSSGLENTYRKLYNSIPGHVEYQANYLIYSKKQHLFLVAFEFSGITNEVVVYRE 540
Query: 121 NTDAQTANSKSSTVKGRDAAFIGSNENQFAILDDDRTGLAVYTLPGGASKEAKDNDKVFE 180
NT+ T NSKSS VKGRDAAFIG NENQFAILD+D+TGLAVY LPGG S E KD +K FE
Sbjct: 541 NTEVDTVNSKSSNVKGRDAAFIGPNENQFAILDEDKTGLAVYILPGGPSHEPKDIEKAFE 600
Query: 181 ENQPAETSVGSIRGPTPFMFETEVDRIFSTPIDSTLMFASHGNQIGQVKLIQGYRL---- 236
ENQ ETS SI+GPTPFMFETEVDRIFSTP+DSTLMFASHG+QIG VKLIQGYRL
Sbjct: 601 ENQATETSDNSIKGPTPFMFETEVDRIFSTPLDSTLMFASHGSQIGLVKLIQGYRLSTST 660
Query: 237 STSTANGHYISTNSEGKK 254
STST++GHYI+T EGKK
Sbjct: 661 STSTSSGHYITTKGEGKK 678