Miyakogusa Predicted Gene

Lj0g3v0152989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152989.1 Non Characterized Hit- tr|I1NZ98|I1NZ98_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.93,2e-19,Dynein_light,Dynein light chain, type 1/2; DLC,Dynein
light chain, type 1/2; no description,Dynein l,CUFF.9450.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g464690.1 | dynein light chain type 1 family protein | HC ...   193   2e-50
Medtr6g087770.1 | cytoplasmic dynein light chain | HC | chr6:330...   102   1e-22
Medtr2g101850.1 | cytoplasmic dynein light chain | HC | chr2:438...   100   3e-22
Medtr4g120150.1 | dynein light chain type 1 family protein | HC ...    90   4e-19
Medtr4g114060.2 | dynein light chain type 1 family protein | HC ...    87   3e-18
Medtr4g114060.1 | dynein light chain type 1 family protein | HC ...    87   3e-18
Medtr4g107350.1 | dynein light chain type 1 family protein | HC ...    80   6e-16
Medtr1g031880.1 | dynein light chain type 1 family protein | HC ...    79   1e-15
Medtr8g104900.1 | dynein light chain type 1 family protein | HC ...    77   3e-15

>Medtr8g464690.1 | dynein light chain type 1 family protein | HC |
           chr8:22911007-22910269 | 20130731
          Length = 109

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 103/110 (93%), Gaps = 1/110 (0%)

Query: 1   MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
           MLEGKAVIGETDMLQTMQQ+ALDLA KALDF+DVTEAI+IARFIKKEFDR+HGPGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLACKALDFYDVTEAIDIARFIKKEFDRVHGPGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSADQEAKENHFSAALEAARA 110
           GTDFGSFVTHC GCFIYFCIGS+AILLF+GSA  +A+EN FS A+EA +A
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSMAILLFKGSAGPQAEENQFS-AIEATKA 109


>Medtr6g087770.1 | cytoplasmic dynein light chain | HC |
          chr6:33030451-33029408 | 20130731
          Length = 93

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 65/92 (70%)

Query: 1  MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
          MLEGK V+ ETDM   MQ  A+  AS+ALD +DV +   IA +IKKEFD+ +G  WQC+V
Sbjct: 1  MLEGKGVVEETDMPLKMQIQAMSYASQALDLYDVCDCRSIAGYIKKEFDKNYGSRWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSA 92
          G++FG F +H  G FIYF + +L  L+++G++
Sbjct: 61 GSNFGCFFSHTPGTFIYFSLETLKFLIYKGAS 92


>Medtr2g101850.1 | cytoplasmic dynein light chain | HC |
          chr2:43819163-43818213 | 20130731
          Length = 91

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 62/90 (68%)

Query: 1  MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
          MLEGKA+I +TDM   MQ  A+  AS+ALD +DV +   IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCIGSLAILLFRG 90
          G+ FG F TH  G FIYF + +L  L+F+G
Sbjct: 61 GSSFGCFFTHSKGTFIYFTLETLNFLIFKG 90


>Medtr4g120150.1 | dynein light chain type 1 family protein | HC |
           chr4:49807388-49810451 | 20130731
          Length = 130

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 5   KAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDF 64
           K +I   DML  MQ+ A+D+A  A +  +V +  ++A  IKKEFD+ HGP W CIVG +F
Sbjct: 46  KVIIKSADMLPDMQKEAVDIAVVAFERHNVEK--DVAETIKKEFDKRHGPTWHCIVGRNF 103

Query: 65  GSFVTHCCGCFIYFCIGSLAILLFRG 90
           GS+VTH    F+YF +   A+LLF+ 
Sbjct: 104 GSYVTHETNHFVYFYLDQKAVLLFKS 129


>Medtr4g114060.2 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 50/79 (63%)

Query: 11  TDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVTH 70
           +DM   MQ +A   A +  D  +   +  IA  IKKEFD+ +GP W CIVG  FGSFVTH
Sbjct: 159 SDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGSFVTH 218

Query: 71  CCGCFIYFCIGSLAILLFR 89
             GCF+YF + +L ILLF+
Sbjct: 219 STGCFLYFSMENLYILLFK 237


>Medtr4g114060.1 | dynein light chain type 1 family protein | HC |
           chr4:46940344-46937870 | 20130731
          Length = 245

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 50/79 (63%)

Query: 11  TDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVTH 70
           +DM   MQ +A   A +  D  +   +  IA  IKKEFD+ +GP W CIVG  FGSFVTH
Sbjct: 159 SDMPSFMQVHAFRCARRTYDSLEEFSSKHIAHNIKKEFDKAYGPAWHCIVGPSFGSFVTH 218

Query: 71  CCGCFIYFCIGSLAILLFR 89
             GCF+YF + +L ILLF+
Sbjct: 219 STGCFLYFSMENLYILLFK 237


>Medtr4g107350.1 | dynein light chain type 1 family protein | HC |
           chr4:44373665-44370969 | 20130731
          Length = 307

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 12  DMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVTHC 71
           DM   MQ +A+D A KA D  +   +  +A  +KKEFD ++GP W CIVGT FGSFVTH 
Sbjct: 222 DMPPFMQIHAVDCARKAFDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGSFVTHS 281

Query: 72  CGCFIYFCIG-SLAILLFR 89
            G F+YF +   L IL+F+
Sbjct: 282 VGGFLYFSMDQKLYILIFK 300


>Medtr1g031880.1 | dynein light chain type 1 family protein | HC |
           chr1:11198739-11201405 | 20130731
          Length = 146

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 12  DMLQTMQQNALDLASKALDFFDV--TEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVT 69
           DM   +Q++A   A   LD       ++  +A  +KKEFD  +GP W CIVGT FGS+VT
Sbjct: 59  DMSLPLQKHAFQFARDHLDSMPTKKPDSKHLALSLKKEFDSCYGPAWHCIVGTSFGSYVT 118

Query: 70  HCCGCFIYFCIGSLAILLFR 89
           H  G F+YF I  + ILLFR
Sbjct: 119 HSVGGFVYFSIDKVHILLFR 138


>Medtr8g104900.1 | dynein light chain type 1 family protein | HC |
           chr8:44226350-44232514 | 20130731
          Length = 133

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 12  DMLQTMQQNALDLASKALDFFDVTE--AIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVT 69
           DM  T+Q +A   A   LD     +     +A  +KKEFD  +GP W CIVGT FGS+VT
Sbjct: 45  DMPLTLQNHAFRCARHLLDSMPPKKLHTKRLALTLKKEFDSTYGPAWHCIVGTSFGSYVT 104

Query: 70  HCCGCFIYFCIGSLAILLFRGSAD 93
           H  G F+YF I  + ILLF+ + +
Sbjct: 105 HSVGGFLYFSIDKVHILLFKTTVE 128