Miyakogusa Predicted Gene

Lj0g3v0152759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152759.1 CUFF.9438.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g033960.1 | PPR containing plant-like protein | HC | chr1:...   137   3e-33

>Medtr1g033960.1 | PPR containing plant-like protein | HC |
           chr1:12282466-12279095 | 20130731
          Length = 745

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 89/123 (72%)

Query: 1   MLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSVLALIKALHYYGR 60
           M + N+KPDG VYNL+I  HCR  NVRKAYNMY EMVH GFV HM +V+ALIKAL   G 
Sbjct: 620 MHQRNFKPDGTVYNLIIHGHCRHGNVRKAYNMYTEMVHCGFVSHMVTVIALIKALSKEGM 679

Query: 61  YNEMSWVIQNTLRSCNLNESELPKVLNEIDFPKCQINALLDVLAEIAMDGLLLDGGKCSY 120
            +E+S V+QN L SC LN++EL K L  I+F +  ++ +L++L E+A +GLL DGG  S 
Sbjct: 680 NDELSSVMQNILNSCTLNDAELSKALVRINFKEGHMDVVLNLLTEMANNGLLPDGGDYSC 739

Query: 121 ASA 123
           ASA
Sbjct: 740 ASA 742