Miyakogusa Predicted Gene

Lj0g3v0152709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152709.1 Non Characterized Hit- tr|G7KNM5|G7KNM5_MEDTR
Uncharacterized protein OS=Medicago truncatula
GN=MTR_,60.27,0.00000000000002,seg,NULL,CUFF.9426.1
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g023580.1 | hypothetical protein | HC | chr6:8252108-82556...    83   5e-17

>Medtr6g023580.1 | hypothetical protein | HC |
          chr6:8252108-8255637 | 20130731
          Length = 230

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 5/64 (7%)

Query: 1  MGSCYSVQRKSDS----DMRLKLAFW-SKTDKLVIPPSPIKEQPKNGYFNWSSTRSTTNF 55
          MGSC SVQRK+++    +M+LK+AF+ SKT KLVIPPSPIKEQPKNG   +S +RSTTNF
Sbjct: 1  MGSCSSVQRKTNNKENNNMKLKVAFFGSKTQKLVIPPSPIKEQPKNGDLKFSPSRSTTNF 60

Query: 56 TDYG 59
           D+G
Sbjct: 61 NDFG 64