Miyakogusa Predicted Gene

Lj0g3v0152109.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152109.3 tr|G7KVF5|G7KVF5_MEDTR Homeobox-leucine zipper
protein HOX27 OS=Medicago truncatula GN=MTR_7g093430 ,45,0.000002,
,CUFF.9379.3
         (52 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093430.1 | homeobox associated leucine zipper protein | H...    57   5e-09
Medtr1g054285.1 | homeobox associated leucine zipper protein | H...    55   2e-08

>Medtr7g093430.1 | homeobox associated leucine zipper protein | HC
          | chr7:37139196-37141155 | 20130731
          Length = 296

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 39/80 (48%), Gaps = 34/80 (42%)

Query: 1  MELALSLGDTPKPFT----------------------------------SPDPPVQLNLL 26
          MELALSLGDTPK F+                                   P PP+QLNLL
Sbjct: 1  MELALSLGDTPKAFSLFENPTKLPNKSFCIPLEEHGLAEKSLDQKIDSSDPRPPIQLNLL 60

Query: 27 PFTPVQRSQPSSYLQIPWLN 46
          P TPV RSQPS  L+IPWLN
Sbjct: 61 PSTPVLRSQPSPLLRIPWLN 80


>Medtr1g054285.1 | homeobox associated leucine zipper protein | HC
          | chr1:23334986-23337160 | 20130731
          Length = 296

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 40/78 (51%), Gaps = 30/78 (38%)

Query: 1  MELALSLGDTPK-----------------------------PFTSPDPPVQLNLLPFTPV 31
          MELALSLGDTPK                                S DPP+QL+LLPFTPV
Sbjct: 1  MELALSLGDTPKLPLSFLDKPNKDPLPSFFSTQQGKTSEEEKRGSSDPPIQLDLLPFTPV 60

Query: 32 QRS-QPSSYLQIPWLNQP 48
           RS  PSS+L IPWL QP
Sbjct: 61 LRSPHPSSHLPIPWLTQP 78