Miyakogusa Predicted Gene

Lj0g3v0151829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151829.1 tr|I1CPV8|I1CPV8_RHIO9 SSU rRNA processing
protein OS=Rhizopus delemar (strain RA 99-880 / ATCC
MYA-,41.73,3e-18,RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED,Ribosomal
RNA-processing protein 7; coiled-coil,NULL; seg,CUFF.9359.1
         (291 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g051625.2 | ribosomal RNA-processing protein | HC | chr4:1...   321   6e-88
Medtr4g051625.1 | ribosomal RNA-processing protein | HC | chr4:1...   318   4e-87
Medtr8g085800.1 | ribosomal RNA-processing protein | HC | chr8:3...   311   4e-85
Medtr1g090650.1 | ribosomal RNA-processing protein | HC | chr1:4...   234   5e-62
Medtr8g085830.1 | ribosomal RNA-processing protein | HC | chr8:3...    86   3e-17

>Medtr4g051625.2 | ribosomal RNA-processing protein | HC |
           chr4:18597591-18591773 | 20130731
          Length = 332

 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 174/313 (55%), Positives = 209/313 (66%), Gaps = 50/313 (15%)

Query: 25  QNADVELETHVTLNTQEDRGM-------------RDRKANKDK----------------- 54
           QNADVE  THVT+N   D GM             R+RK NKDK                 
Sbjct: 24  QNADVE--THVTVNNDVDNGMQLIKGKKAKVITIRERK-NKDKNLVGREKPEVVDVVVEE 80

Query: 55  ----------------ASTNRKRKNKEKSRVERQMPVGEEVDLVEKNDGILDNCHSKYEE 98
                           A+T+RKRKNK+K+ V RQ P  +EVD  EKNDG++++  SK EE
Sbjct: 81  KNVDHGMQVTEGKKVKATTSRKRKNKDKNLVGRQTP-EDEVDFEEKNDGVVEHSDSKEEE 139

Query: 99  IKDSMEHGDSDIGASVEPCRSXXXXXXXXXEVQNSPEKVEGHHQDEVHIISSGDEDCSKG 158
           +KDS +H DS++ A+++PC+S         EV  SPEK E +HQD++HIISSGD+DCS G
Sbjct: 140 VKDSKKHRDSNVEAAIKPCKSKQAKKKRRKEVIKSPEKREQNHQDDIHIISSGDDDCSHG 199

Query: 159 MKKWIMEYHQSRPGLETLQRQIDDFITAHXXXXXXXXXXXXXXXXDGGWTVVVHHKGRKK 218
           +KKWIMEYHQ+RPGLE LQ QI+DF+T +                +GGWTVV HHKGRKK
Sbjct: 200 IKKWIMEYHQNRPGLEVLQNQIEDFLTTYEEKLEEERKAKEALAAEGGWTVVQHHKGRKK 259

Query: 219 TTESESGIAVGSVAQAAVENKMSKKKPKEVGLDFYRFQKKEAHRNELMELQSKFEEDKKH 278
           TT+SESGIAVGSVAQAA+ENK++KKK KEVG DFYRFQK+EA RNELMELQSKFEEDKK 
Sbjct: 260 TTDSESGIAVGSVAQAALENKLAKKKNKEVGQDFYRFQKREAQRNELMELQSKFEEDKKR 319

Query: 279 LQQLRASRKFRPY 291
           LQQLRA+RKFRPY
Sbjct: 320 LQQLRAARKFRPY 332


>Medtr4g051625.1 | ribosomal RNA-processing protein | HC |
           chr4:18597591-18591773 | 20130731
          Length = 377

 Score =  318 bits (815), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/243 (64%), Positives = 189/243 (77%), Gaps = 1/243 (0%)

Query: 49  KANKDKASTNRKRKNKEKSRVERQMPVGEEVDLVEKNDGILDNCHSKYEEIKDSMEHGDS 108
           K  K KA+T+RKRKNK+K+ V RQ P  +EVD  EKNDG++++  SK EE+KDS +H DS
Sbjct: 136 KGRKVKATTSRKRKNKDKNLVGRQTP-EDEVDFEEKNDGVVEHSDSKEEEVKDSKKHRDS 194

Query: 109 DIGASVEPCRSXXXXXXXXXEVQNSPEKVEGHHQDEVHIISSGDEDCSKGMKKWIMEYHQ 168
           ++ A+++PC+S         EV  SPEK E +HQD++HIISSGD+DCS G+KKWIMEYHQ
Sbjct: 195 NVEAAIKPCKSKQAKKKRRKEVIKSPEKREQNHQDDIHIISSGDDDCSHGIKKWIMEYHQ 254

Query: 169 SRPGLETLQRQIDDFITAHXXXXXXXXXXXXXXXXDGGWTVVVHHKGRKKTTESESGIAV 228
           +RPGLE LQ QI+DF+T +                +GGWTVV HHKGRKKTT+SESGIAV
Sbjct: 255 NRPGLEVLQNQIEDFLTTYEEKLEEERKAKEALAAEGGWTVVQHHKGRKKTTDSESGIAV 314

Query: 229 GSVAQAAVENKMSKKKPKEVGLDFYRFQKKEAHRNELMELQSKFEEDKKHLQQLRASRKF 288
           GSVAQAA+ENK++KKK KEVG DFYRFQK+EA RNELMELQSKFEEDKK LQQLRA+RKF
Sbjct: 315 GSVAQAALENKLAKKKNKEVGQDFYRFQKREAQRNELMELQSKFEEDKKRLQQLRAARKF 374

Query: 289 RPY 291
           RPY
Sbjct: 375 RPY 377


>Medtr8g085800.1 | ribosomal RNA-processing protein | HC |
           chr8:35574333-35569420 | 20130731
          Length = 334

 Score =  311 bits (798), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 191/267 (71%), Gaps = 14/267 (5%)

Query: 25  QNADVELETHVTLNTQEDRGMRDRKANKDKASTNRKRKNKEKSRVERQMPVGEEVDLVEK 84
           QNAD E+E                K  K KA+T+RKRKNK+K+ V RQ PV  EVDL E+
Sbjct: 82  QNADPEMEIV--------------KGKKVKATTSRKRKNKDKNLVRRQTPVDGEVDLEEQ 127

Query: 85  NDGILDNCHSKYEEIKDSMEHGDSDIGASVEPCRSXXXXXXXXXEVQNSPEKVEGHHQDE 144
           NDG++++C SK +E+K+S +  DS+I A+++PC S         EV  S EK E + QD+
Sbjct: 128 NDGVVEHCDSKEKEVKNSKKPRDSNIEAAIKPCTSKQAKKKRRKEVPKSSEKKEQNQQDD 187

Query: 145 VHIISSGDEDCSKGMKKWIMEYHQSRPGLETLQRQIDDFITAHXXXXXXXXXXXXXXXXD 204
           +HIISSGD+DCS GMKKWIMEYHQSRPGLE LQ QI+DFI+ +                +
Sbjct: 188 IHIISSGDDDCSNGMKKWIMEYHQSRPGLEVLQHQIEDFISTYEEKLEEERKAKEALAAE 247

Query: 205 GGWTVVVHHKGRKKTTESESGIAVGSVAQAAVENKMSKKKPKEVGLDFYRFQKKEAHRNE 264
           GGWTVV HHKGRKKTT++ESGIAVGSVAQAA ENK++KKK   VG DFYRFQK+EA RNE
Sbjct: 248 GGWTVVQHHKGRKKTTDAESGIAVGSVAQAAAENKLAKKKHTGVGQDFYRFQKREAQRNE 307

Query: 265 LMELQSKFEEDKKHLQQLRASRKFRPY 291
           LMELQSKFEEDKK LQQLRA+RKFRPY
Sbjct: 308 LMELQSKFEEDKKRLQQLRAARKFRPY 334


>Medtr1g090650.1 | ribosomal RNA-processing protein | HC |
           chr1:40590833-40594958 | 20130731
          Length = 188

 Score =  234 bits (598), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 128/163 (78%)

Query: 129 EVQNSPEKVEGHHQDEVHIISSGDEDCSKGMKKWIMEYHQSRPGLETLQRQIDDFITAHX 188
           ++Q+  EK +  HQ+E HIISSGD+DC  GMKKWIME HQSRP LE LQ QIDDF+T++ 
Sbjct: 26  DLQDRIEKTQQDHQNEFHIISSGDDDCLIGMKKWIMECHQSRPRLEALQNQIDDFVTSYE 85

Query: 189 XXXXXXXXXXXXXXXDGGWTVVVHHKGRKKTTESESGIAVGSVAQAAVENKMSKKKPKEV 248
                          +GGWTV  +HKGRKKTT+SESGIAVGSVAQAAVENK+ KKKPKEV
Sbjct: 86  EKLEEERKTKEALAAEGGWTVAAYHKGRKKTTDSESGIAVGSVAQAAVENKLDKKKPKEV 145

Query: 249 GLDFYRFQKKEAHRNELMELQSKFEEDKKHLQQLRASRKFRPY 291
           GLDFY F+K+EA RNE+MELQ KFEEDKK LQQLRA+RKFRPY
Sbjct: 146 GLDFYCFKKREAQRNEIMELQGKFEEDKKRLQQLRAARKFRPY 188


>Medtr8g085830.1 | ribosomal RNA-processing protein | HC |
           chr8:35587650-35587000 | 20130731
          Length = 73

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 53/88 (60%), Gaps = 27/88 (30%)

Query: 204 DGGWTVVVHHKGRKKTTESESGIAVGSVAQAAVENKMSKKKPKEVGLDFYRFQKKEAHRN 263
           +GGWTVV HHKG          +    V Q                 DFYRFQ++EA RN
Sbjct: 13  EGGWTVVRHHKG----------LGCSRVHQ-----------------DFYRFQEREAQRN 45

Query: 264 ELMELQSKFEEDKKHLQQLRASRKFRPY 291
           ELMELQSKFEEDKK L+QLRA+RKFRPY
Sbjct: 46  ELMELQSKFEEDKKRLRQLRAARKFRPY 73