Miyakogusa Predicted Gene

Lj0g3v0151579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151579.1 Non Characterized Hit- tr|C5YB39|C5YB39_SORBI
Putative uncharacterized protein Sb06g034000
OS=Sorghu,40,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.9326.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   198   2e-51

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein |
           HC | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 105/120 (87%)

Query: 34  VNKLMAKITSNPDNPKPSVLHALASILETHESRYMEESGHSSSSNARAAHLIGRLGSVIR 93
           VNKLM KITS+PDNPKP+VLHALA+ILET ES YM+E+ HSSS+NARAAH IGRLGS+IR
Sbjct: 34  VNKLMDKITSSPDNPKPNVLHALATILETQESNYMDENAHSSSTNARAAHNIGRLGSIIR 93

Query: 94  ENDDFFELISAKFLLETRYSTAVQAAAARLILCCSLTWIYPHVFEESAVENITNWVKDDN 153
           ENDDFFELIS KFL E  YSTAV+AA+ RL+LCCSLTWIYPHVFEE  +EN+ NW  +D+
Sbjct: 94  ENDDFFELISLKFLSENGYSTAVRAASVRLLLCCSLTWIYPHVFEEPVLENLNNWATEDS 153